Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   ABA10_RS08190 Genome accession   NZ_CP011534
Coordinates   1562479..1562928 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain UD1022     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1557479..1567928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABA10_RS08150 (ABA10_08150) ctaE 1557495..1558118 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  ABA10_RS08155 (ABA10_08155) ctaF 1558121..1558453 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  ABA10_RS08160 (ABA10_08160) ctaG 1558481..1559374 (+) 894 WP_033883825.1 cytochrome c oxidase assembly factor CtaG -
  ABA10_RS08165 (ABA10_08165) ylbA 1559406..1559768 (-) 363 WP_003232238.1 YugN family protein -
  ABA10_RS08170 (ABA10_08170) ylbB 1559908..1560354 (+) 447 WP_003221362.1 CBS domain-containing protein -
  ABA10_RS08175 (ABA10_08175) ylbC 1560438..1561478 (+) 1041 WP_047182571.1 CAP domain-containing protein -
  ABA10_RS08180 (ABA10_08180) ylbD 1561710..1562108 (+) 399 WP_003232233.1 YlbD family protein -
  ABA10_RS08185 (ABA10_08185) ylbE 1562124..1562363 (+) 240 WP_003232231.1 YlbE-like family protein -
  ABA10_RS08190 (ABA10_08190) ylbF 1562479..1562928 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  ABA10_RS08195 (ABA10_08195) ylbG 1562983..1563255 (+) 273 WP_009967171.1 YlbG family protein -
  ABA10_RS08200 (ABA10_08200) rsmD 1563578..1564132 (+) 555 WP_047182572.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ABA10_RS08205 (ABA10_08205) coaD 1564137..1564622 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  ABA10_RS08210 (ABA10_08210) spoVV 1564633..1565859 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  ABA10_RS08215 (ABA10_08215) ylbK 1566040..1566822 (+) 783 WP_047182573.1 patatin family protein -
  ABA10_RS08220 (ABA10_08220) sepM 1566824..1567849 (+) 1026 WP_014476730.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=128950 ABA10_RS08190 WP_003221370.1 1562479..1562928(+) (ylbF) [Bacillus subtilis strain UD1022]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=128950 ABA10_RS08190 WP_003221370.1 1562479..1562928(+) (ylbF) [Bacillus subtilis strain UD1022]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCTATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGTGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1