Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   ABA10_RS05140 Genome accession   NZ_CP011534
Coordinates   994640..995287 (+) Length   215 a.a.
NCBI ID   WP_021479675.1    Uniprot ID   -
Organism   Bacillus subtilis strain UD1022     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 989640..1000287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABA10_RS05125 (ABA10_05125) glpD 989813..991480 (+) 1668 WP_015383198.1 glycerol-3-phosphate dehydrogenase -
  ABA10_RS05130 (ABA10_05130) pgcA 991610..993355 (+) 1746 WP_029726344.1 phosphoglucomutase -
  ABA10_RS05135 (ABA10_05135) yhcY 993504..994643 (+) 1140 WP_047182340.1 two-component system sensor histidine kinase YhcY -
  ABA10_RS05140 (ABA10_05140) vraR 994640..995287 (+) 648 WP_021479675.1 two-component system response regulator YhcZ Regulator
  ABA10_RS05145 (ABA10_05145) yhdA 995284..995808 (+) 525 WP_047182341.1 FMN-dependent NADPH-azoreductase -
  ABA10_RS05150 (ABA10_05150) yhdB 995823..996065 (-) 243 WP_003233373.1 YhdB family protein -
  ABA10_RS05155 (ABA10_05155) yhdC 996266..996589 (+) 324 WP_014476269.1 YqzG/YhdC family protein -
  ABA10_RS05160 (ABA10_05160) lytF 996631..998091 (-) 1461 WP_047182342.1 peptidoglycan endopeptidase LytF -
  ABA10_RS05165 (ABA10_05165) nsrR 998244..998684 (-) 441 WP_014479293.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24163.80 Da        Isoelectric Point: 6.3039

>NTDB_id=128920 ABA10_RS05140 WP_021479675.1 994640..995287(+) (vraR) [Bacillus subtilis strain UD1022]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGIEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPETNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHAGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=128920 ABA10_RS05140 WP_021479675.1 994640..995287(+) (vraR) [Bacillus subtilis strain UD1022]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGGAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTTGTCGGAGAAGCTGCAACTGGAATAGAAGCTCTCCGTGTTATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGGAGACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGCTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTGA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACAAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCAAACGGGAAAAGCAATAAAGAAATCGCAGCCGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGATCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAATCTGAATGGAGAGATCT
CAAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

97.209

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

38.053

100

0.4

Multiple sequence alignment