Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   IX91_RS10680 Genome accession   NZ_CP009354
Coordinates   2371042..2372436 (-) Length   464 a.a.
NCBI ID   WP_038550519.1    Uniprot ID   A0A0A0SDV5
Organism   Vibrio tubiashii ATCC 19109     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2366042..2377436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IX91_RS10645 (IX91_10870) moaE 2366757..2367218 (-) 462 WP_004748425.1 molybdopterin synthase catalytic subunit MoaE -
  IX91_RS10650 (IX91_10875) moaD 2367221..2367466 (-) 246 WP_004748423.1 molybdopterin synthase sulfur carrier subunit -
  IX91_RS10655 (IX91_10880) moaC 2367463..2367942 (-) 480 WP_004748421.1 cyclic pyranopterin monophosphate synthase MoaC -
  IX91_RS10660 (IX91_10885) moaB 2367958..2368470 (-) 513 WP_004748419.1 molybdenum cofactor biosynthesis protein B -
  IX91_RS10665 (IX91_10890) moaA 2368547..2369536 (-) 990 WP_004748418.1 GTP 3',8-cyclase MoaA -
  IX91_RS10670 (IX91_10895) - 2369828..2370715 (+) 888 WP_004748415.1 YvcK family protein -
  IX91_RS10675 (IX91_10900) luxU 2370701..2371042 (-) 342 WP_004748414.1 quorum-sensing phosphorelay protein LuxU -
  IX91_RS10680 (IX91_10905) luxO 2371042..2372436 (-) 1395 WP_038550519.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  IX91_RS10685 (IX91_10910) uvrB 2372698..2374728 (-) 2031 WP_004748411.1 excinuclease ABC subunit UvrB -
  IX91_RS10700 (IX91_10925) - 2376220..2377269 (+) 1050 WP_236642802.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 51616.98 Da        Isoelectric Point: 5.7841

>NTDB_id=128864 IX91_RS10680 WP_038550519.1 2371042..2372436(-) (luxO) [Vibrio tubiashii ATCC 19109]
MQYNTQAKNSKYLLMVEDTASVAALYRSYLTPLQIDINIVGTGRDAIDSLNFRTPDLILLDLRLPDMTGMDVLHAVKEKN
PDVPVIFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNALRKANKLKNDGDNPGSQGYQGFIGSSQTMQAVYRT
IDLAATSKASIFITGESGTGKEVCAEAIHATSKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNKDPWKEVEEGRFREDLYYRLYVIPLHLPPLRE
RGDDIIEIAYSLLGFMSKEEGKDFVRLAAEVVDRFSRYEWPGNVRQLQNVLRNVVVLNNGREIDLAMLPPPLNQPSKNEI
RVTRPQNETVSVQDIFPLWLTEKNAIEQAIKACDGNIPKAAGYLDVSPSTIYRKLQAWNAKEVQ

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=128864 IX91_RS10680 WP_038550519.1 2371042..2372436(-) (luxO) [Vibrio tubiashii ATCC 19109]
ATGCAATATAATACACAAGCAAAAAACTCAAAGTATTTGTTGATGGTTGAAGATACCGCCTCTGTAGCGGCGTTGTATCG
TTCTTATCTCACACCACTTCAAATTGATATCAATATCGTCGGCACTGGCCGTGATGCCATTGATAGCCTCAATTTCCGAA
CCCCTGACCTTATCCTGCTCGATCTACGATTACCTGATATGACAGGTATGGATGTCTTGCACGCGGTGAAAGAAAAGAAC
CCGGATGTGCCCGTTATTTTTATGACTGCGCATGGTTCGATTGATACCGCCGTAGAAGCAATGCGTCATGGCGCGCAAGA
CTTCCTAATTAAACCCTGTGAAGCTGATCGACTCCGTGTAACGGTTAACAACGCTCTGCGTAAAGCGAACAAGCTGAAAA
ACGATGGTGATAATCCGGGAAGTCAAGGATATCAAGGTTTTATCGGCAGTAGTCAAACGATGCAGGCGGTATACAGAACC
ATTGACTTGGCGGCGACGAGTAAAGCCAGTATCTTTATCACTGGTGAAAGTGGAACGGGTAAAGAAGTGTGTGCTGAAGC
AATTCACGCGACCAGTAAACGTGGTGACAAACCGTTTATTGCCATCAACTGTGCTGCCATCCCAAAAGATCTGATTGAAA
GTGAACTATTTGGTCACGTTAAAGGCGCATTTACCGGTGCTGCGACGGATCGACAAGGCGCGGCGGAGCTTGCTGATGGT
GGTACGCTTTTCCTTGATGAGCTGTGTGAAATGGACTTAGATTTGCAGACTAAGCTGTTACGTTTTATTCAAACCGGTAC
CTTCCAGAAAGTTGGTTCGTCGAAGATGAAGAGCGTGGATGTACGTTTTGTTTGCGCAACCAATAAAGATCCTTGGAAAG
AAGTCGAAGAAGGGCGCTTCCGCGAAGATTTGTACTATCGTTTGTATGTTATTCCTCTTCATTTGCCACCTTTGCGTGAG
CGCGGTGACGATATTATTGAAATTGCCTACTCACTGCTGGGTTTCATGTCGAAGGAAGAGGGTAAAGATTTTGTTCGTTT
GGCCGCTGAGGTCGTTGACCGTTTCTCGCGCTACGAATGGCCGGGCAATGTGCGTCAGTTGCAAAATGTCTTACGTAATG
TGGTGGTGTTAAACAATGGCCGTGAGATTGATTTAGCCATGCTGCCACCGCCGCTCAATCAACCATCAAAAAATGAGATT
CGAGTGACTAGACCGCAAAACGAAACAGTCTCAGTACAAGATATATTCCCTTTGTGGCTTACTGAGAAAAATGCCATTGA
ACAGGCAATAAAAGCGTGTGATGGTAACATACCGAAAGCCGCAGGCTATTTGGATGTAAGTCCATCAACCATATACAGAA
AACTACAAGCGTGGAATGCCAAGGAAGTACAATAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A0SDV5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.892

96.121

0.845

Multiple sequence alignment