Detailed information NTG0128858

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: IX91_RS06725
• Genome accession: NZ_CP009354
• Coordinates: 1478649..1480073 (-)
• Length: 474 a.a.
• NCBI ID: WP_004743059.1
• Uniprot ID: -
• Organism: Vibrio tubiashii ATCC 19109
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1473649..1485073

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IX91_RS06705 (IX91_06845)	-	1475079..1476284 (+)	1206	WP_004743064.1	HD-GYP domain-containing protein	-
IX91_RS06710 (IX91_06850)	cdd	1476332..1477219 (-)	888	WP_004743063.1	cytidine deaminase	-
IX91_RS06715 (IX91_06855)	-	1477463..1478140 (-)	678	WP_004743062.1	CidB/LrgB family autolysis modulator	-
IX91_RS06720 (IX91_06860)	-	1478140..1478505 (-)	366	WP_038197618.1	CidA/LrgA family protein	-
IX91_RS06725 (IX91_06865)	sbcB	1478649..1480073 (-)	1425	WP_004743059.1	exodeoxyribonuclease I	Machinery gene
IX91_RS06730 (IX91_06870)	-	1480390..1481238 (+)	849	WP_236642868.1	hypothetical protein	-
IX91_RS06735 (IX91_06875)	-	1481283..1482209 (+)	927	WP_004743057.1	hypothetical protein	-
IX91_RS06740 (IX91_06880)	-	1482472..1483845 (-)	1374	WP_004743056.1	L-cystine transporter	-
IX91_RS06745 (IX91_06885)	-	1484035..1484751 (-)	717	WP_004749490.1	nucleoside-diphosphate sugar epimerase	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54602.01 Da
• Isoelectric Point: 4.9526

>NTDB_id=128858 IX91_RS06725 WP_004743059.1 1478649..1480073(-) (sbcB) [Vibrio tubiashii ATCC 19109]
MQQEHQPTFFFFDYETWGTSPAKDRPCQFAGVRTDMDFNIIGEPLVIYCQPPADYLPAPEAALITGITPQTAETQGLSEP
EFIAKIHEQLATPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACYALRPEGVNWPENDEGFI
SFKLEHLSVANGIEHENAHDAMADVIATIEMAKKVKAAQPKLFDYFLSMRHKRKLNELIDIVNMTPLMHVSGMLGKECNY
TSWVVPVAWHPTNQNAVICVDLAKDPQALLDLDTKQLNERLYTKRSDLAPDELPVPVKLIHLNKCPILAPAKTLTAENAE
KIGIDREKCLENLALLRKHPEVREKLIGVYGIEREYEKSNDVDSMLYDGFFSPADKAAMNIIRETDPNNLSALDISFSDD
RIAPLLFRYRARNFPWTLDESEQQRWATHCRDYFESRIEDYMLNLENLVHEHESDQKKIAILKSIYQYVQKRVS

Nucleotide

• Length: 1425 bp

>NTDB_id=128858 IX91_RS06725 WP_004743059.1 1478649..1480073(-) (sbcB) [Vibrio tubiashii ATCC 19109]
ATGCAGCAAGAGCATCAGCCTACGTTTTTCTTTTTTGATTACGAGACGTGGGGAACTAGCCCAGCGAAAGATCGACCGTG
TCAGTTTGCGGGTGTTCGTACCGATATGGACTTCAATATTATTGGTGAACCTCTTGTTATTTATTGTCAGCCGCCTGCGG
ATTATCTTCCGGCACCAGAAGCCGCACTAATTACAGGTATAACTCCGCAAACCGCGGAAACCCAAGGTCTTTCAGAGCCC
GAGTTTATCGCAAAGATCCACGAACAACTGGCAACACCAAACACCATTAGCTTGGGCTATAACAGTATCCGATTCGATGA
TGAGGTAACGCGCTACACCTGTTACCGAAACTTTATCGATCCTTATGCGTGGAGCTGGCAAAACGGTAACTCTCGCTGGG
ATTTGCTTGATGTTATGCGTGCTTGCTACGCGCTTCGTCCAGAAGGAGTAAACTGGCCTGAGAACGATGAAGGTTTTATC
AGCTTTAAGCTTGAGCATTTATCTGTAGCCAATGGCATTGAACATGAGAACGCACACGATGCGATGGCGGATGTTATCGC
GACGATTGAAATGGCCAAAAAGGTTAAAGCGGCTCAACCAAAATTGTTTGATTACTTCCTAAGCATGCGTCACAAGCGCA
AGTTGAATGAACTGATCGACATCGTGAACATGACACCATTGATGCATGTTTCAGGTATGTTGGGCAAAGAGTGTAACTAC
ACTAGCTGGGTTGTTCCTGTTGCTTGGCACCCGACTAATCAGAATGCGGTCATTTGTGTCGATTTGGCGAAAGACCCGCA
AGCCCTATTGGATTTGGATACAAAGCAGCTTAATGAGCGACTGTATACTAAGCGATCTGACCTTGCACCTGACGAGCTTC
CAGTCCCTGTTAAGCTTATCCACCTCAATAAGTGCCCTATTCTTGCTCCAGCCAAAACACTCACTGCTGAAAACGCAGAG
AAAATTGGCATTGACCGTGAAAAATGCTTAGAGAATCTCGCCCTGCTCCGCAAGCACCCTGAGGTTCGTGAAAAGCTGAT
TGGTGTTTATGGCATAGAGCGGGAATATGAAAAGAGCAATGACGTCGATAGCATGCTCTACGATGGTTTCTTCTCTCCGG
CAGATAAAGCGGCGATGAACATCATTCGTGAAACTGACCCAAACAATTTATCTGCGCTTGATATTTCATTTAGTGATGAC
CGCATTGCGCCACTGCTGTTCCGTTACCGCGCGCGAAACTTCCCGTGGACGCTCGATGAGTCAGAACAACAGCGATGGGC
GACGCACTGTCGTGACTACTTCGAAAGTCGTATTGAAGACTACATGTTAAATTTGGAAAACTTAGTTCACGAACATGAGA
GTGACCAAAAGAAAATCGCTATTTTAAAATCTATCTACCAATACGTACAAAAGCGAGTATCCTAG

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-190)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	79.193	99.367	0.787