Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   ABE83_RS19635 Genome accession   NZ_CP011522
Coordinates   4676241..4676903 (+) Length   220 a.a.
NCBI ID   WP_053560531.1    Uniprot ID   -
Organism   Streptomyces sp. CFMR 7 strain CFMR-7     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4671241..4681903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABE83_RS19615 (ABE83_19660) kynU 4671378..4672601 (+) 1224 WP_053560527.1 kynureninase -
  ABE83_RS19620 (ABE83_19665) - 4672840..4673742 (+) 903 WP_053560528.1 alpha/beta hydrolase -
  ABE83_RS19625 (ABE83_19670) - 4673830..4674651 (+) 822 WP_053560529.1 NAD(P)H-binding protein -
  ABE83_RS19630 (ABE83_19675) - 4674892..4676244 (+) 1353 WP_053560530.1 histidine kinase -
  ABE83_RS19635 (ABE83_19680) vraR 4676241..4676903 (+) 663 WP_053560531.1 response regulator transcription factor Regulator
  ABE83_RS19640 (ABE83_19685) - 4677008..4678213 (+) 1206 WP_053560532.1 cytochrome P450 -
  ABE83_RS19645 (ABE83_19690) - 4678243..4678581 (-) 339 WP_053560533.1 hypothetical protein -
  ABE83_RS19650 (ABE83_19695) - 4678693..4678980 (-) 288 WP_053562909.1 DUF1876 domain-containing protein -
  ABE83_RS19655 (ABE83_19700) - 4679040..4679918 (-) 879 WP_053560534.1 hypothetical protein -
  ABE83_RS19660 (ABE83_19705) - 4680105..4681388 (+) 1284 WP_026237801.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23587.43 Da        Isoelectric Point: 4.7962

>NTDB_id=128684 ABE83_RS19635 WP_053560531.1 4676241..4676903(+) (vraR) [Streptomyces sp. CFMR 7 strain CFMR-7]
MSDIRVLIVDDQMMVREGFSVLLNAMPGITVVGEAVDGRDAVDKVAALLPDVVLMDIRMPGMNGIDATREIVAQVVDAKV
LVLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVASGEALLAPTVTRRLITEFSKLAEAPRPPALARVGDLTER
ETEVLVLIAQGLSNAEIASHLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPG

Nucleotide


Download         Length: 663 bp        

>NTDB_id=128684 ABE83_RS19635 WP_053560531.1 4676241..4676903(+) (vraR) [Streptomyces sp. CFMR 7 strain CFMR-7]
ATGAGCGACATCCGCGTCCTGATCGTGGACGACCAGATGATGGTCCGCGAGGGCTTCTCCGTCCTGCTCAACGCCATGCC
GGGGATCACCGTCGTGGGGGAGGCGGTGGACGGCCGGGACGCCGTCGACAAGGTCGCCGCCCTCCTCCCGGACGTCGTCC
TGATGGACATCCGGATGCCCGGGATGAACGGCATCGACGCCACCCGCGAGATCGTCGCGCAGGTCGTGGACGCCAAGGTG
CTGGTCCTGACCACCTTCGACCTGGACGAGTACGTGTACCAGGCGCTGCGTGCCGGGGCCTCGGGCTTCCTCCTCAAGGA
CGCCTCGGCCCGGCAGCTCGCGGACGGCGTACGGGTGGTGGCCTCGGGCGAGGCCCTGCTCGCGCCGACCGTGACCCGGC
GCCTGATCACCGAGTTCTCCAAGCTCGCGGAGGCCCCGCGACCGCCCGCCCTCGCCCGGGTCGGGGACCTCACGGAGCGC
GAGACGGAGGTGCTCGTCCTGATCGCGCAGGGGCTCTCCAACGCGGAGATCGCCTCGCACCTGGTCGTCGCCGAGTCCAC
GATCAAGACGCATGTGAGCCGCATCCTGGTGAAACTGGGCCTGCGCGACCGGACGCAGGCGGCGGTGTTCGCGTACGAGG
CGAGGCTGGTGACGCCGGGGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-115)

Bacterial regulatory proteins, luxR family (GerE)

(157-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.925

97.273

0.427
  degU Bacillus subtilis subsp. subtilis str. 168

41.818

100

0.418

Multiple sequence alignment