Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   AA958_RS18200 Genome accession   NZ_CP011492
Coordinates   4274691..4275365 (+) Length   224 a.a.
NCBI ID   WP_047017119.1    Uniprot ID   -
Organism   Streptomyces sp. CNQ-509     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4269691..4280365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA958_RS18180 (AA958_18180) - 4270109..4270840 (-) 732 WP_047017116.1 ABC transporter permease -
  AA958_RS18185 (AA958_18185) - 4270925..4272088 (+) 1164 WP_047017117.1 ABC transporter ATP-binding protein -
  AA958_RS18190 (AA958_18190) - 4272194..4273312 (-) 1119 WP_047017118.1 SAM-dependent methyltransferase -
  AA958_RS18195 (AA958_18195) - 4273407..4274633 (+) 1227 WP_107086229.1 sensor histidine kinase -
  AA958_RS18200 (AA958_18200) vraR 4274691..4275365 (+) 675 WP_047017119.1 response regulator transcription factor Regulator
  AA958_RS18205 (AA958_18205) - 4275488..4276576 (-) 1089 WP_047017120.1 DUF5937 family protein -
  AA958_RS18210 (AA958_18210) - 4276573..4277751 (-) 1179 WP_047017121.1 low specificity L-threonine aldolase -
  AA958_RS18215 (AA958_18215) - 4277990..4278898 (+) 909 WP_047017122.1 Rossmann-like and DUF2520 domain-containing protein -
  AA958_RS18220 (AA958_18220) panC 4278911..4279870 (+) 960 WP_078898364.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24058.00 Da        Isoelectric Point: 5.3766

>NTDB_id=128536 AA958_RS18200 WP_047017119.1 4274691..4275365(+) (vraR) [Streptomyces sp. CNQ-509]
MTIRVMLVDDQALLRTGFRMVLAAQPDMDVVAEAGDGDEAVQLLAVTKVDVVLMDVRMPRLDGVEATRRICADKPAEAPP
KVLILTTFDLDEYAFSALQAGASGFMLKDVPPGDLLSAIRAVHSGDAVVAPSTTRRLIDRFTAVMPAPAGERAHPELKRL
TGREREVLLLIAQGLSNGEIAAQLVLSEATVKTHVGRILTKLELRDRVQAVVLAYETGLVRAGG

Nucleotide


Download         Length: 675 bp        

>NTDB_id=128536 AA958_RS18200 WP_047017119.1 4274691..4275365(+) (vraR) [Streptomyces sp. CNQ-509]
GTGACGATCCGGGTCATGCTCGTGGACGACCAGGCGCTGCTGCGCACCGGCTTCCGGATGGTGCTGGCCGCCCAGCCCGA
CATGGACGTCGTCGCGGAGGCAGGGGACGGCGACGAGGCGGTGCAGCTCCTCGCCGTGACGAAGGTGGACGTCGTGCTCA
TGGACGTACGCATGCCGCGCCTCGACGGCGTCGAGGCGACGCGGCGCATCTGCGCGGACAAGCCGGCGGAGGCGCCGCCG
AAGGTGCTGATCCTGACCACCTTCGACCTGGACGAGTACGCCTTCTCCGCGTTGCAGGCCGGGGCGTCGGGCTTCATGCT
CAAGGACGTGCCGCCCGGCGACCTGCTGAGCGCGATCCGGGCCGTGCACAGCGGTGACGCGGTCGTCGCGCCGAGCACGA
CGCGGCGGCTCATCGACCGGTTCACCGCCGTGATGCCCGCCCCGGCGGGGGAGCGGGCGCACCCGGAGCTGAAGCGGCTG
ACGGGCCGGGAGCGCGAGGTGCTGCTGTTGATCGCGCAGGGGTTGTCGAACGGGGAGATCGCGGCGCAACTGGTGCTGTC
GGAGGCGACGGTGAAGACACATGTGGGGCGGATCCTCACGAAGCTGGAGCTGCGGGACAGGGTGCAGGCGGTGGTCCTGG
CCTACGAGACGGGTCTGGTACGGGCCGGAGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-120)

Bacterial regulatory proteins, luxR family (GerE)

(160-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.09

99.107

0.397
  degU Bacillus subtilis subsp. subtilis str. 168

38.496

100

0.388

Multiple sequence alignment