Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   AA976_RS06020 Genome accession   NZ_CP011484
Coordinates   1264268..1265317 (+) Length   349 a.a.
NCBI ID   WP_064436826.1    Uniprot ID   -
Organism   Helicobacter pylori strain CC33C     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1259268..1270317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA976_RS06000 (AA976_06035) - 1259402..1260145 (+) 744 WP_064436822.1 carbonic anhydrase -
  AA976_RS06005 (AA976_06040) - 1260384..1261433 (-) 1050 WP_064436823.1 DUF874 family protein -
  AA976_RS06010 (AA976_06045) asd 1261851..1262891 (-) 1041 WP_064436824.1 aspartate-semialdehyde dehydrogenase -
  AA976_RS06015 (AA976_06050) hisS 1262878..1264206 (-) 1329 WP_064436825.1 histidine--tRNA ligase -
  AA976_RS06020 (AA976_06055) waaF 1264268..1265317 (+) 1050 WP_064436826.1 lipopolysaccharide heptosyltransferase II Regulator
  AA976_RS06025 (AA976_06060) fusA 1266118..1268196 (-) 2079 WP_000101864.1 elongation factor G -
  AA976_RS06030 (AA976_06065) rpsG 1268208..1268675 (-) 468 WP_001254355.1 30S ribosomal protein S7 -
  AA976_RS06035 (AA976_06070) rpsL 1268691..1269098 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39483.21 Da        Isoelectric Point: 9.8199

>NTDB_id=128364 AA976_RS06020 WP_064436826.1 1264268..1265317(+) (waaF) [Helicobacter pylori strain CC33C]
MSANAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAIALNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAVTATPKEYHQVEKYCFLFSQFLEKELDQKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVTAALLEKGHEIYFFGAKEDAIVSEEILKSVKSLLKNPLLSH
NAYNLCGKTSIEELIQRIAVLDLFITNDSGPMHVAASTKTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLQAAHILLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=128364 AA976_RS06020 WP_064436826.1 1264268..1265317(+) (waaF) [Helicobacter pylori strain CC33C]
ATGAGTGCAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAATGCGCGTTTTATATTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCGCTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTGTTCGCATCGGTTTTGCTCAATTTTTCCGTTCTTTGTTTCTCAGCCATGCGGTAACTGCTACCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTGTTTTCGCAATTTTTAGAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAATTAGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGATTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCGGCTTCTTATTACGCTGAAGTTACGGCTGCTTTGTTAGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATTGTTTCTGAAGAGATTTTAAAATCCGTTAAAAGCTTATTGAAAAACCCCTTATTATCCCAT
AACGCTTACAATTTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCTGTTTTGGATTTATTCATCACTAA
CGATAGCGGTCCCATGCATGTAGCCGCTAGCACGAAAACCCCCCTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATTGTGTTGAACCACCATTTAAGCTGTTCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCCATCACGCCCCTTGAAGTCCTTCAAGCCGCTCACATTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.081

98.567

0.375

Multiple sequence alignment