Detailed information NTG0128314

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: JM49_RS20930
• Genome accession: NZ_CP009290
• Coordinates: 4682241..4684472 (-)
• Length: 743 a.a.
• NCBI ID: WP_038580913.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. aurantiaca strain JD37
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4677241..4689472

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JM49_RS20895 (JM49_21365)	murB	4677618..4678637 (-)	1020	WP_038580904.1	UDP-N-acetylmuramate dehydrogenase	-
JM49_RS20900 (JM49_21370)	-	4678634..4679098 (-)	465	WP_009047821.1	low molecular weight protein-tyrosine-phosphatase	-
JM49_RS20905 (JM49_21375)	kdsB	4679098..4679862 (-)	765	WP_028683135.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
JM49_RS20910 (JM49_21380)	-	4679859..4680044 (-)	186	WP_007931663.1	Trm112 family protein	-
JM49_RS20915 (JM49_21385)	lpxK	4680068..4681078 (-)	1011	WP_038580908.1	tetraacyldisaccharide 4'-kinase	-
JM49_RS20920 (JM49_21390)	-	4681078..4681506 (-)	429	WP_009047818.1	biopolymer transporter ExbD	-
JM49_RS20925 (JM49_21395)	exbB	4681503..4682138 (-)	636	WP_038580911.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
JM49_RS20930 (JM49_21400)	comA	4682241..4684472 (-)	2232	WP_038580913.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
JM49_RS20935 (JM49_21405)	-	4684621..4685136 (+)	516	WP_038580916.1	DUF2062 domain-containing protein	-
JM49_RS20940 (JM49_21410)	-	4685185..4685964 (-)	780	WP_007931651.1	ABC transporter permease	-
JM49_RS20945 (JM49_21415)	-	4685961..4686893 (-)	933	WP_038580920.1	ABC transporter ATP-binding protein	-
JM49_RS20950 (JM49_21420)	-	4687026..4687649 (-)	624	WP_038580922.1	glutathione S-transferase	-
JM49_RS20955 (JM49_21425)	-	4687692..4688351 (-)	660	WP_038580923.1	transglutaminase family protein	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81238.34 Da
• Isoelectric Point: 9.9468

>NTDB_id=128314 JM49_RS20930 WP_038580913.1 4682241..4684472(-) (comA) [Pseudomonas chlororaphis subsp. aurantiaca strain JD37]
MRTGMLALAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYALALFLLGLAWACVSAQWALDDRLPEPLDGQTRWLEG
RVVGLPQQAEGVLRFELEGGRARRGRIPQRLRLAWYGGPPLHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLVAAEGGWRARIRQRLLQVDAHGRAGGLAALVLGDGSGLSREDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNTVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLFLAVPYLGEGLLWLAGGLLDLLFRGLTLLAAQWPAWVAPAIPLWAWSISALGAFLLLLPAGVPLRPLGWPMLLLMV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRLGDSDLGARVVLPSLRKLGVERLDLMLLSHADADHAGGA
DAVQRGLPVARLVSGDPEGLPAYLPAEPCASGEQWQWDGVRFSLWQWTDAQNGNQKSCVMQVEAKGERLLLTGDIDALAE
RALLDTPLAVETHWLQAPHHGSRSSSSPALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GTYTEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=128314 JM49_RS20930 WP_038580913.1 4682241..4684472(-) (comA) [Pseudomonas chlororaphis subsp. aurantiaca strain JD37]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTTTTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGCT
GGCCGTGTTGCCGGTGGTGGCCTTGATGCTGCTGCCGTTTCGCACCTATGCATTGGCACTTTTTCTGTTGGGCCTGGCGT
GGGCTTGCGTGAGTGCGCAATGGGCGCTGGACGATCGTTTGCCGGAACCGCTCGATGGACAGACCCGCTGGCTTGAGGGC
CGGGTAGTGGGATTGCCGCAGCAGGCCGAGGGCGTGCTGCGTTTCGAACTGGAAGGCGGGCGGGCTCGGCGCGGACGGAT
TCCCCAGCGCCTGCGCCTGGCCTGGTATGGCGGGCCGCCGCTGCACAGCGGCGAACGCTGGCGCCTGGCGGTAAAACTCA
AGCGTCCCGCTGGGCTGGTCAATCTGCAGGCCTTCGATCACGAGGCCTGGCTGCTGGCCCAGCGCATTGGCGCCACGGGC
ACGGTCAAGGATGGGCAACTGCTGGTTGCCGCGGAGGGTGGCTGGCGTGCGCGTATTCGCCAGCGCTTGCTGCAGGTCGA
TGCCCATGGGCGCGCCGGTGGCCTGGCGGCCCTGGTGCTGGGTGACGGCTCGGGGCTGAGCCGGGAAGACTGGCGTGTCC
TGCAAGACACCGGGACCGTGCACCTGATGGTGATTTCCGGGCAGCACATCAGTTTGCTGGCCGCGGTGATGTACGCCCTG
GTGGCGGGGCTGGCCCGCTACGGCCTGTGGCCCGGACGTTGGCCCTGGCTGCCCTGGGCCTGTGGGCTGGCATTCGCCTC
GGCCCTGGGTTACGGGTTGCTGGCGGGCTTCGACGTGCCGGTGCGTCGCGCCTGTGTGATGGTTGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGTCACCTGGGCGCCTGGTGGCCATTTCTGCTGGCGTTGAATACGGTGCTGTTGTTCGAGCCGCTG
GCCAGTCTGCAGCCAGGGTTCTGGCTGTCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTCGGCGGGCGCCTGGGAGG
CTGGCGCTGGTGGCAATCCTGGACCCGTATTCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGCTGGCGCTGGGGT
TGCCCATCAGCCTCAGCGGGCCTCTGGCCAACCTGCTGGCGGAACCCTGGATCAGCCTGTTGGTGCTGCCGCCGGCGTTG
CTTGGCACCTTGTTCCTGGCGGTGCCCTACCTGGGCGAAGGCCTGCTCTGGCTGGCCGGCGGTTTGCTGGACTTGCTGTT
CCGCGGCCTGACGCTATTGGCTGCCCAATGGCCGGCATGGGTAGCGCCGGCCATACCGCTCTGGGCCTGGAGCATCAGTG
CGCTGGGAGCCTTTCTGCTGTTGCTGCCCGCTGGCGTGCCGCTGCGTCCCTTGGGATGGCCGATGCTGCTGTTGATGGTG
TTTCCGCCGAAAAACACCCTGCCATATGGCGAGGCGGAAGTCTGGCAACTGGATGTCGGGCAGGGGCTGGCGGTACTGGT
GCGGACTCGCGAGCACGCAATGCTGTACGACGCCGGCCCGCGTTTGGGCGACTCCGACCTGGGCGCGCGGGTGGTACTGC
CATCCTTGCGCAAGCTGGGCGTCGAGCGCCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGATCATGCTGGTGGCGCG
GACGCCGTCCAGCGCGGCTTGCCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGCTTGCCGGCCTATTTGCCGGCAGA
GCCTTGCGCCAGCGGCGAGCAATGGCAATGGGACGGAGTACGGTTTTCTTTGTGGCAATGGACGGATGCGCAGAACGGCA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCAAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGATGCCCTGGCGGAA
CGCGCGTTGCTGGATACTCCGCTGGCCGTCGAGACCCATTGGTTGCAGGCGCCACACCACGGCAGCCGCAGCTCGTCGTC
CCCGGCCTTGCTCAAGGCCCTGGCGCCTTCGGCAGTGCTGATTTCCCGAGGGCACGGCAATGGCTTCGGGCATCCGCACC
CGCAGGTCGTCGAGCGTTATCGCCAGCAAGGGACCGCCATTTACGACAGCGCGGAGCAAGGAGCGCTGCGGTTGATGCTG
GGCACCTACACCGAACCGACGAGCCTGCGGGCGCAGCGGCGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

• Competence protein (Competence) (198-463)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.256	96.77	0.622