Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   EE66_RS05900 Genome accession   NZ_CP011483
Coordinates   1199330..1199596 (-) Length   88 a.a.
NCBI ID   WP_064431320.1    Uniprot ID   -
Organism   Helicobacter pylori strain DU15     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1194330..1204596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EE66_RS05880 (EE66_05875) - 1195135..1195322 (+) 188 Protein_1132 DUF1104 domain-containing protein -
  EE66_RS08665 (EE66_05880) - 1195285..1196912 (-) 1628 Protein_1133 type IA DNA topoisomerase -
  EE66_RS05890 (EE66_05885) - 1196915..1199283 (-) 2369 Protein_1134 VirB4 family type IV secretion/conjugal transfer ATPase -
  EE66_RS05900 (EE66_05895) comB3 1199330..1199596 (-) 267 WP_064431320.1 hypothetical protein Machinery gene
  EE66_RS05905 (EE66_05900) - 1199597..1199899 (-) 303 WP_082231441.1 virB2 type IV secretion protein -
  EE66_RS05910 (EE66_05905) - 1199896..1201419 (-) 1524 WP_064431321.1 hypothetical protein -
  EE66_RS05915 (EE66_05910) - 1201436..1201719 (-) 284 Protein_1138 hypothetical protein -
  EE66_RS08675 (EE66_05915) - 1201739..1202037 (-) 299 Protein_1139 hypothetical protein -
  EE66_RS05925 (EE66_05920) - 1202039..1202563 (+) 525 Protein_1140 type IA DNA topoisomerase -
  EE66_RS05930 (EE66_05925) - 1202618..1203088 (+) 471 WP_064431323.1 hypothetical protein -
  EE66_RS05935 (EE66_05930) - 1203058..1203859 (+) 802 Protein_1142 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  EE66_RS05940 (EE66_05935) - 1203981..1204544 (-) 564 WP_064431609.1 hypothetical protein -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10191.03 Da        Isoelectric Point: 4.8782

>NTDB_id=128313 EE66_RS05900 WP_064431320.1 1199330..1199596(-) (comB3) [Helicobacter pylori strain DU15]
MALHIVCVESINIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAMGLMASCVFVFYILEFFDEDITAILHVLFTLR
TGARNYYA

Nucleotide


Download         Length: 267 bp        

>NTDB_id=128313 EE66_RS05900 WP_064431320.1 1199330..1199596(-) (comB3) [Helicobacter pylori strain DU15]
ATGGCATTGCATATTGTTTGTGTTGAAAGTATCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGTTGGATTGTTAGTTTCTTAATGTCGGCATGGTTACTTTCATTCCAACCACTTTATGCTATGGGTTTAATGGCTA
GTTGTGTGTTTGTATTCTACATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGTGCTTTTCACATTAAGG
ACAGGAGCTAGAAATTATTATGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

40.964

94.318

0.386

Multiple sequence alignment