Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   JM49_RS20925 Genome accession   NZ_CP009290
Coordinates   4681503..4682138 (-) Length   211 a.a.
NCBI ID   WP_038580911.1    Uniprot ID   -
Organism   Pseudomonas chlororaphis subsp. aurantiaca strain JD37     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4676503..4687138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM49_RS20890 (JM49_21360) - 4676899..4677369 (-) 471 WP_038580901.1 (2Fe-2S)-binding protein -
  JM49_RS20895 (JM49_21365) murB 4677618..4678637 (-) 1020 WP_038580904.1 UDP-N-acetylmuramate dehydrogenase -
  JM49_RS20900 (JM49_21370) - 4678634..4679098 (-) 465 WP_009047821.1 low molecular weight protein-tyrosine-phosphatase -
  JM49_RS20905 (JM49_21375) kdsB 4679098..4679862 (-) 765 WP_028683135.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JM49_RS20910 (JM49_21380) - 4679859..4680044 (-) 186 WP_007931663.1 Trm112 family protein -
  JM49_RS20915 (JM49_21385) lpxK 4680068..4681078 (-) 1011 WP_038580908.1 tetraacyldisaccharide 4'-kinase -
  JM49_RS20920 (JM49_21390) - 4681078..4681506 (-) 429 WP_009047818.1 biopolymer transporter ExbD -
  JM49_RS20925 (JM49_21395) exbB 4681503..4682138 (-) 636 WP_038580911.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  JM49_RS20930 (JM49_21400) comA 4682241..4684472 (-) 2232 WP_038580913.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JM49_RS20935 (JM49_21405) - 4684621..4685136 (+) 516 WP_038580916.1 DUF2062 domain-containing protein -
  JM49_RS20940 (JM49_21410) - 4685185..4685964 (-) 780 WP_007931651.1 ABC transporter permease -
  JM49_RS20945 (JM49_21415) - 4685961..4686893 (-) 933 WP_038580920.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22961.15 Da        Isoelectric Point: 8.1069

>NTDB_id=128313 JM49_RS20925 WP_038580911.1 4681503..4682138(-) (exbB) [Pseudomonas chlororaphis subsp. aurantiaca strain JD37]
MWELVKSGGWMMLPIILSSIVAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKEKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=128313 JM49_RS20925 WP_038580911.1 4681503..4682138(-) (exbB) [Pseudomonas chlororaphis subsp. aurantiaca strain JD37]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGTCGCGGTCGGCATCATTGC
CGAGCGTCTGTGGACCCTGCGGGCCAGCCGTGTTACTCCGCCGCATCTGCTGGGGCAGGTGTGGCGCTGGATCAAGGACA
AGCAACTCAATAAGGAAAAACTCAAGGAACTGCGCGCCCATTCACCCCTGGGCGAGATCCTGGCCGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGGTCATGAAAGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATTCATGAACTGGAGCGCTACCT
CAATGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTGGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCAGCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATTACCACCGCG
TCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAACTGGTCGTTGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAGGTGGTGCAGGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867

Multiple sequence alignment