Detailed information NTG0128304

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: JM49_RS04695
• Genome accession: NZ_CP009290
• Coordinates: 1031290..1032618 (-)
• Length: 442 a.a.
• NCBI ID: WP_038575644.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. aurantiaca strain JD37
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1026290..1037618

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JM49_RS04680 (JM49_04740)	-	1026652..1029723 (+)	3072	WP_038575639.1	PilC/PilY family type IV pilus protein	-
JM49_RS04685 (JM49_04745)	-	1029737..1030138 (+)	402	WP_038575642.1	type IV pilin protein	-
JM49_RS04690 (JM49_04750)	thiO	1030193..1031293 (+)	1101	WP_038575643.1	glycine oxidase ThiO	-
JM49_RS04695 (JM49_04755)	pilR	1031290..1032618 (-)	1329	WP_038575644.1	sigma-54 dependent transcriptional regulator	Regulator
JM49_RS04700 (JM49_04760)	-	1032892..1033125 (-)	234	WP_038575645.1	PP0621 family protein	-
JM49_RS04705 (JM49_04765)	-	1033260..1034282 (-)	1023	WP_009050934.1	outer membrane protein assembly factor BamD	-
JM49_RS04710 (JM49_04770)	rluD	1034435..1035397 (+)	963	WP_009050933.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
JM49_RS04715 (JM49_04775)	pgeF	1035394..1036119 (+)	726	WP_038575648.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48693.96 Da
• Isoelectric Point: 8.2766

>NTDB_id=128304 JM49_RS04695 WP_038575644.1 1031290..1032618(-) (pilR) [Pseudomonas chlororaphis subsp. aurantiaca strain JD37]
MGPRQKVLIVDDDPGVREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQHHRLRMPLA
ILSTCARQETAVQALKAGAIDFLSKPVALARLRELLNGTLPGSTPANPATGPLLGDSTAMHKLRVQIDKLAQSQASVYIS
GESGSGKELVARAIHDQGPRASQGFVPINCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKTLQAEVHAGRFRQDLYYRLNVIELAVPPLRARKADIESLATAILE
RLAQGNGQQLARLQPGALLALQGYDFPGNVRELENLLERAHTLCENRQIEARDLQLTPNGAHPAIAPGPAQVIDLEGYLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=128304 JM49_RS04695 WP_038575644.1 1031290..1032618(-) (pilR) [Pseudomonas chlororaphis subsp. aurantiaca strain JD37]
ATGGGCCCACGGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCGTTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAGCGCCATACCCGCAGCGCCCGCACCCTGGGTGAAGCGCGTCACTGGCTGGCCCGGGAAGGTTTCGACCTGTGCCTGA
GCGACCTGCATCTGCCCGACGGTACGGGTCTGGAATTACTCGAGCATATCCAGCACCACCGGCTGCGAATGCCGCTGGCC
ATACTCAGCACCTGCGCCCGCCAGGAAACCGCGGTCCAGGCCCTGAAGGCCGGTGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCGCGCCTGCGCGAGCTGCTGAATGGCACCCTGCCCGGATCGACACCAGCGAACCCAGCTACCGGCCCACTGC
TGGGTGATTCGACCGCCATGCACAAACTGCGCGTGCAGATCGACAAACTGGCCCAGAGTCAGGCCTCGGTCTATATCAGC
GGAGAGTCCGGCAGCGGCAAGGAACTGGTCGCCCGTGCGATCCACGACCAGGGACCACGGGCCAGCCAGGGCTTCGTGCC
GATCAACTGCGGAGCCATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCCA
TCGAAGACAAGCCCGGCCTGTTCCAGGCAGCGCACGGCGGCACGCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGCGCGCTCCAGGAGAAGGCGGTGCGCTGTGTCGGCGGGCAGCAGGAGGTCCAGGTCGATGT
GCGCATTCTCTGCGCCACCCACAAGACGCTGCAGGCGGAAGTGCATGCCGGGCGTTTTCGTCAGGACCTCTACTACCGCC
TCAACGTGATCGAGTTGGCGGTGCCACCGCTAAGGGCGCGCAAGGCTGATATCGAATCCTTGGCCACAGCCATACTCGAG
CGCCTGGCGCAGGGCAACGGCCAACAGTTGGCGCGGCTCCAGCCAGGCGCGCTGCTGGCACTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAGCTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCGGCAGATCGAAGCACGCGACC
TGCAACTGACACCAAACGGTGCCCACCCGGCCATCGCGCCCGGCCCGGCACAGGTGATCGACCTTGAAGGCTATCTGCAG
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	66.817	100	0.67
pilR	Acinetobacter baumannii strain A118	44.227	100	0.459