Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | AA971_RS06940 | Genome accession | NZ_CP011482 |
| Coordinates | 1434150..1434725 (+) | Length | 191 a.a. |
| NCBI ID | WP_064432677.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain L7 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1429150..1439725
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AA971_RS06915 (AA971_06920) | uvrD | 1429841..1431886 (+) | 2046 | WP_064432875.1 | DNA helicase UvrD | - |
| AA971_RS06920 (AA971_06925) | flgA | 1431883..1432539 (+) | 657 | WP_064432674.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| AA971_RS06925 (AA971_06930) | - | 1432549..1433112 (+) | 564 | WP_064432675.1 | UbiX family flavin prenyltransferase | - |
| AA971_RS06930 (AA971_06935) | coaD | 1433112..1433585 (+) | 474 | WP_001169261.1 | pantetheine-phosphate adenylyltransferase | - |
| AA971_RS06935 (AA971_06940) | tmk | 1433587..1434162 (+) | 576 | WP_064432676.1 | dTMP kinase | - |
| AA971_RS06940 (AA971_06945) | comFC | 1434150..1434725 (+) | 576 | WP_064432677.1 | ComF family protein | Machinery gene |
| AA971_RS06945 (AA971_06950) | - | 1434758..1436797 (+) | 2040 | WP_064432678.1 | class I SAM-dependent DNA methyltransferase | - |
| AA971_RS06950 (AA971_06955) | - | 1436794..1437999 (+) | 1206 | WP_064432679.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21407.02 Da Isoelectric Point: 9.2796
>NTDB_id=128287 AA971_RS06940 WP_064432677.1 1434150..1434725(+) (comFC) [Helicobacter pylori strain L7]
MRCLTCLKLSFKPLCPNCLNDLPLNLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRTNNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLNLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRTNNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=128287 AA971_RS06940 WP_064432677.1 1434150..1434725(+) (comFC) [Helicobacter pylori strain L7]
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAATTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCCCAAAAAGCCGGTGCGGAATTTGTGAAAATCTTACAAGAAAAAGGC
TTGACTACCCCCCTTTATGGAATCGCCATTGACGATAAAATCAAATCCTTTTACTCGCATTCGGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCACCAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACTCTAAACATCAAAGCCCACTTTGCAATCGCTCTTTG
CAGCGCAGATGAATGA
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAATTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCCCAAAAAGCCGGTGCGGAATTTGTGAAAATCTTACAAGAAAAAGGC
TTGACTACCCCCCTTTATGGAATCGCCATTGACGATAAAATCAAATCCTTTTACTCGCATTCGGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCACCAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACTCTAAACATCAAAGCCCACTTTGCAATCGCTCTTTG
CAGCGCAGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
94.241 |
100 |
0.942 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
35.938 |
100 |
0.361 |