Detailed information NTG0128248

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: AA105_RS11310
• Genome accession: NZ_CP011419
• Coordinates: 2240040..2241134 (+)
• Length: 364 a.a.
• NCBI ID: WP_002936177.1
• Uniprot ID: -
• Organism: Streptococcus suis strain NSUI002
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2235040..2246134

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AA105_RS11280 (AA105_11300)	-	2235126..2235872 (-)	747	WP_013730689.1	Bro-N domain-containing protein	-
AA105_RS11285 (AA105_11310)	-	2235891..2236118 (-)	228	WP_013730690.1	helix-turn-helix transcriptional regulator	-
AA105_RS11290 (AA105_11315)	-	2236272..2236985 (+)	714	WP_013730691.1	helix-turn-helix transcriptional regulator	-
AA105_RS11295 (AA105_11320)	-	2237349..2238179 (+)	831	WP_013730692.1	KilA-N domain-containing protein	-
AA105_RS11300 (AA105_11325)	-	2238344..2239516 (+)	1173	WP_013730693.1	site-specific integrase	-
AA105_RS11305 (AA105_11330)	yaaA	2239654..2240037 (+)	384	WP_002936175.1	S4 domain-containing protein YaaA	-
AA105_RS11310 (AA105_11335)	recF	2240040..2241134 (+)	1095	WP_002936177.1	DNA replication/repair protein RecF	Machinery gene
AA105_RS11315 (AA105_11340)	-	2241574..2242776 (-)	1203	WP_009909264.1	IS110-like element ISSsu7 family transposase	-
AA105_RS11320 (AA105_11345)	guaB	2243027..2244508 (-)	1482	WP_014637236.1	IMP dehydrogenase	-
AA105_RS11325 (AA105_11350)	trpS	2244740..2245765 (-)	1026	WP_013730696.1	tryptophan--tRNA ligase	-

Sequence

Protein

• Length: 364 a.a.
• Molecular weight: 42217.34 Da
• Isoelectric Point: 7.2235

>NTDB_id=128248 AA105_RS11310 WP_002936177.1 2240040..2241134(+) (recF) [Streptococcus suis strain NSUI002]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIKLTDDVNLIDKFLT
ELERCRKRDLFKKNTGVGPHRDDVAFFINGMNAHYGSQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide

• Length: 1095 bp

>NTDB_id=128248 AA105_RS11310 WP_002936177.1 2240040..2241134(+) (recF) [Streptococcus suis strain NSUI002]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCCCTTGACATTCACTTGACAGACAAGGGGCGAGTGACCAAGGTCAACCATCTCAAACAAGCCAAGCTTTCCAACTA
TATCGGCCACATGAATGTTGTTCTCTTCGCCCCTGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TCATCGATGTCGAGCTCGGGCAAATCAAGCCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCCGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGAAATATCTGGCA
ATCGGGAAGAATTGACAATCGAATACCAAACCTCAATCAAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACG
GAATTGGAAAGGTGTCGCAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGGTAGCCAAGGTCAGCACCGCAGTCTCGTTCTGTCACTCAAACTGGCTGAAATTG
AGCTGATGAAGGAGGTCACACGAGAATACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTAGATAATAATCGTCAA
ATCAAACTACTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	70.083	99.176	0.695
recF	Bacillus subtilis subsp. subtilis str. 168	43.514	100	0.442