Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   R70723_RS31245 Genome accession   NZ_CP009283
Coordinates   7272810..7273316 (-) Length   168 a.a.
NCBI ID   WP_039878032.1    Uniprot ID   A0AA43RYB8
Organism   Paenibacillus sp. FSL R7-0273     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 7267810..7278316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R70723_RS31230 (R70723_32435) - 7269614..7271572 (-) 1959 WP_039878030.1 DNA mismatch repair protein MutS -
  R70723_RS31235 (R70723_32440) - 7272015..7272389 (-) 375 WP_039878031.1 VOC family protein -
  R70723_RS31240 (R70723_32445) rpsR 7272516..7272788 (-) 273 WP_019914552.1 30S ribosomal protein S18 -
  R70723_RS31245 (R70723_32450) ssbA 7272810..7273316 (-) 507 WP_039878032.1 single-stranded DNA-binding protein Machinery gene
  R70723_RS31250 (R70723_32455) rpsF 7273365..7273649 (-) 285 WP_025706808.1 30S ribosomal protein S6 -
  R70723_RS31255 (R70723_32460) - 7273866..7274063 (+) 198 WP_039878033.1 YjzC family protein -
  R70723_RS31265 (R70723_32470) - 7274669..7274893 (-) 225 WP_039878034.1 DUF951 domain-containing protein -
  R70723_RS31270 (R70723_32475) - 7274893..7275921 (-) 1029 WP_039878035.1 mechanosensitive ion channel family protein -
  R70723_RS31275 (R70723_32480) - 7275941..7276198 (-) 258 WP_039878036.1 DUF3343 domain-containing protein -
  R70723_RS31280 (R70723_32485) yyaC 7276360..7276968 (+) 609 WP_039878037.1 spore protease YyaC -
  R70723_RS31285 (R70723_32490) - 7276940..7277440 (-) 501 WP_039878038.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18467.27 Da        Isoelectric Point: 4.8280

>NTDB_id=128142 R70723_RS31245 WP_039878032.1 7272810..7273316(-) (ssbA) [Paenibacillus sp. FSL R7-0273]
MLNRIILIGRLTRDPELRYTPAGVAVTQFTLAVDRNFTGQNGEREADFIPVVTWRQLAETCANYLRKGRLAAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESSQNREGGNAPSGGSMPEEPAYGGGNGGNSARGNNNNFSRSNNNQDPFSGDGKPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=128142 R70723_RS31245 WP_039878032.1 7272810..7273316(-) (ssbA) [Paenibacillus sp. FSL R7-0273]
TTGTTGAACCGTATCATTCTGATCGGTCGGTTGACCCGTGACCCGGAACTTCGTTATACTCCTGCTGGTGTTGCCGTAAC
ACAGTTTACGCTTGCCGTAGACCGTAACTTTACGGGCCAGAACGGTGAACGCGAAGCGGACTTCATCCCGGTAGTAACCT
GGAGACAGCTGGCTGAGACCTGTGCCAATTATTTGCGCAAAGGACGTCTGGCAGCCGTAGAAGGACGCATCCAAGTACGG
AACTATGAGAATAACGAAGGTAAACGTGTATACGTAACTGAAGTTATTGCTGATAATGTCCGTTTCCTGGAATCCTCGCA
GAACCGTGAAGGCGGAAATGCACCGAGTGGCGGTAGTATGCCTGAAGAGCCTGCCTATGGCGGCGGTAACGGCGGTAACA
GTGCACGCGGAAATAACAATAATTTCTCGCGCAGCAACAATAATCAAGATCCTTTTTCGGGCGATGGAAAACCGATCGAT
ATATCGGATGATGATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.802

100

0.577
  ssb Latilactobacillus sakei subsp. sakei 23K

50

100

0.512

Multiple sequence alignment