Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   R50345_RS29890 Genome accession   NZ_CP009281
Coordinates   6771118..6771624 (-) Length   168 a.a.
NCBI ID   WP_036677780.1    Uniprot ID   A0AA95LKX1
Organism   Paenibacillus sp. FSL R5-0345     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6766118..6776624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R50345_RS29875 (R50345_30700) opp4A 6766394..6768124 (-) 1731 WP_231573996.1 oligopeptide ABC transporter substrate-binding protein -
  R50345_RS29880 (R50345_30705) - 6768325..6770277 (-) 1953 WP_042131719.1 DNA mismatch repair protein MutS -
  R50345_RS29885 (R50345_30710) rpsR 6770824..6771096 (-) 273 WP_036651767.1 30S ribosomal protein S18 -
  R50345_RS29890 (R50345_30715) ssbA 6771118..6771624 (-) 507 WP_036677780.1 single-stranded DNA-binding protein Machinery gene
  R50345_RS29895 (R50345_30720) rpsF 6771673..6771957 (-) 285 WP_036677776.1 30S ribosomal protein S6 -
  R50345_RS29900 (R50345_30725) - 6772173..6772370 (+) 198 WP_042131720.1 YjzC family protein -
  R50345_RS29910 (R50345_30740) - 6772895..6773107 (-) 213 WP_042131721.1 DUF951 domain-containing protein -
  R50345_RS29915 - 6773107..6774135 (-) 1029 WP_042131722.1 mechanosensitive ion channel family protein -
  R50345_RS29920 (R50345_30750) - 6774151..6774402 (-) 252 WP_042131723.1 DUF3343 domain-containing protein -
  R50345_RS29925 (R50345_30755) yyaC 6774521..6775126 (+) 606 WP_042131724.1 spore protease YyaC -
  R50345_RS29930 (R50345_30760) - 6775101..6775601 (-) 501 WP_042131725.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18518.32 Da        Isoelectric Point: 4.8280

>NTDB_id=128073 R50345_RS29890 WP_036677780.1 6771118..6771624(-) (ssbA) [Paenibacillus sp. FSL R5-0345]
MLNRIILIGRLTRDPELRYTPAGVAVTQFTLAVDRNFTGQNGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESSQSREGGNTSSGASSMPEEPAYGGGGNAGRGNNNNNFSRNNNTQDPFSGDGKPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=128073 R50345_RS29890 WP_036677780.1 6771118..6771624(-) (ssbA) [Paenibacillus sp. FSL R5-0345]
TTGTTGAACCGTATCATTTTGATCGGACGGTTGACCCGTGACCCGGAACTTCGTTATACTCCCGCTGGTGTTGCCGTAAC
GCAATTTACGCTAGCCGTAGATCGTAACTTTACGGGCCAGAACGGTGAACGTGAGGCAGACTTCATCCCGGTTGTAACCT
GGAGACAGCTAGCAGAAACCTGTGCCAATTACTTGCGCAAAGGTCGTCTGACAGCAGTGGAAGGACGCATCCAAGTGCGG
AATTATGAGAATAACGAAGGCAAACGTGTATACGTAACTGAAGTTATTGCTGATAATGTTCGTTTCCTGGAATCTTCACA
GAGCCGTGAAGGTGGAAATACTTCAAGTGGTGCAAGTAGTATGCCTGAAGAACCAGCATATGGTGGCGGTGGTAACGCTG
GACGCGGAAATAACAACAATAATTTCTCGCGTAACAACAATACTCAAGATCCTTTTTCGGGCGATGGTAAACCGATTGAT
ATATCGGATGATGATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.802

100

0.577
  ssb Latilactobacillus sakei subsp. sakei 23K

49.708

100

0.506

Multiple sequence alignment