Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   SpyM6D471_RS06875 Genome accession   NZ_CP011415
Coordinates   1367209..1368243 (-) Length   344 a.a.
NCBI ID   WP_002983381.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain D471     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1362209..1373243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SpyM6D471_RS06840 (SpyM6D471_06835) - 1362980..1363282 (-) 303 WP_002983488.1 YlxQ-related RNA-binding protein -
  SpyM6D471_RS06845 (SpyM6D471_06840) rnpM 1363275..1363571 (-) 297 WP_002983486.1 RNase P modulator RnpM -
  SpyM6D471_RS06850 (SpyM6D471_06845) nusA 1363587..1364744 (-) 1158 WP_002983485.1 transcription termination factor NusA -
  SpyM6D471_RS06855 (SpyM6D471_06850) rimP 1364919..1365455 (-) 537 WP_002988815.1 ribosome maturation factor RimP -
  SpyM6D471_RS06865 (SpyM6D471_06860) trmB 1365719..1366354 (-) 636 WP_011184863.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SpyM6D471_RS06870 (SpyM6D471_06865) ccrZ 1366354..1367145 (-) 792 WP_002983385.1 cell cycle regulator CcrZ -
  SpyM6D471_RS06875 (SpyM6D471_06870) pptB 1367209..1368243 (-) 1035 WP_002983381.1 ABC transporter permease Regulator
  SpyM6D471_RS06880 (SpyM6D471_06875) pptA 1368246..1368971 (-) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  SpyM6D471_RS06885 (SpyM6D471_06880) - 1369043..1369462 (+) 420 WP_002983376.1 HIT family protein -
  SpyM6D471_RS06890 (SpyM6D471_06885) - 1369459..1369815 (+) 357 WP_002988657.1 hypothetical protein -
  SpyM6D471_RS06895 (SpyM6D471_06890) brpA 1369926..1371209 (-) 1284 WP_011184864.1 biofilm formation/cell division transcriptional regulator BrpA -
  SpyM6D471_RS06900 (SpyM6D471_06895) - 1371218..1371742 (-) 525 WP_011184865.1 GNAT family N-acetyltransferase -
  SpyM6D471_RS06905 (SpyM6D471_06900) tsaE 1371717..1372178 (-) 462 WP_011184866.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40208.44 Da        Isoelectric Point: 10.3713

>NTDB_id=128045 SpyM6D471_RS06875 WP_002983381.1 1367209..1368243(-) (pptB) [Streptococcus pyogenes strain D471]
MKALFLKRRQDFQKQQNKYLRYVLNDHFVLVLMFLLGFAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAVLLFLYPIFRRLGLSLLIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNVLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=128045 SpyM6D471_RS06875 WP_002983381.1 1367209..1368243(-) (pptB) [Streptococcus pyogenes strain D471]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTTTGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAGCGACTCTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTGTATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTCTGTCTTTACTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTGTCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATCCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATGTGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(158-330)

Bacterial ABC transporter protein EcsB (EcsB)

(2-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.023

100

0.43
  pptB Streptococcus salivarius strain HSISS4

42.733

100

0.427