Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P40081_RS35955 Genome accession   NZ_CP009280
Coordinates   8406392..8406901 (-) Length   169 a.a.
NCBI ID   WP_039295814.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL P4-0081     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 8401392..8411901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P40081_RS35940 (P40081_37400) - 8403082..8405055 (-) 1974 WP_042140594.1 DNA mismatch repair protein MutS -
  P40081_RS35945 (P40081_37405) - 8405515..8405889 (-) 375 WP_042140595.1 VOC family protein -
  P40081_RS35950 (P40081_37410) rpsR 8406098..8406370 (-) 273 WP_036699837.1 30S ribosomal protein S18 -
  P40081_RS35955 (P40081_37415) ssbA 8406392..8406901 (-) 510 WP_039295814.1 single-stranded DNA-binding protein Machinery gene
  P40081_RS35960 (P40081_37420) rpsF 8406950..8407234 (-) 285 WP_038598251.1 30S ribosomal protein S6 -
  P40081_RS35965 (P40081_37425) - 8407526..8407723 (+) 198 WP_039295806.1 YjzC family protein -
  P40081_RS35980 (P40081_37440) - 8408236..8408448 (-) 213 WP_039295799.1 DUF951 domain-containing protein -
  P40081_RS35985 (P40081_37445) - 8408448..8409488 (-) 1041 WP_042140597.1 mechanosensitive ion channel family protein -
  P40081_RS35990 (P40081_37450) - 8409481..8409756 (-) 276 WP_042140598.1 DUF3343 domain-containing protein -
  P40081_RS35995 (P40081_37455) yyaC 8409861..8410469 (+) 609 WP_039295795.1 spore protease YyaC -
  P40081_RS36000 (P40081_37460) - 8410441..8410941 (-) 501 WP_042140599.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18492.27 Da        Isoelectric Point: 4.8280

>NTDB_id=128040 P40081_RS35955 WP_039295814.1 8406392..8406901(-) (ssbA) [Paenibacillus sp. FSL P4-0081]
MLNRIILIGRLTRDPELRYTPAGVAVTQFTLAVDRNFTGQNGEREADFIPVVTWRQLAETCANYLRKGRLAAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESSQNREGGNAPSGGSTPEEPAFGGGGNGGNSARGNNNNFSRNNNTQDPFSGDGKPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=128040 P40081_RS35955 WP_039295814.1 8406392..8406901(-) (ssbA) [Paenibacillus sp. FSL P4-0081]
TTGTTGAACCGTATCATTCTGATCGGTCGGTTGACCCGTGACCCGGAACTTCGTTATACTCCCGCTGGTGTTGCCGTAAC
GCAGTTTACGCTTGCCGTAGACCGCAACTTTACGGGCCAGAACGGTGAACGCGAAGCGGACTTTATCCCGGTAGTAACCT
GGAGACAGCTGGCTGAGACCTGTGCCAATTACTTGCGCAAAGGACGACTGGCAGCCGTAGAAGGACGCATCCAAGTACGG
AATTACGAGAATAATGAAGGTAAACGTGTATACGTCACTGAAGTTATTGCTGATAATGTCCGATTCCTGGAATCCTCGCA
GAACCGTGAAGGCGGAAATGCACCAAGTGGTGGAAGTACTCCCGAAGAGCCTGCCTTTGGTGGCGGCGGTAACGGCGGTA
ACAGTGCACGCGGAAATAACAATAATTTCTCGCGTAACAACAATACTCAAGATCCTTTTTCAGGCGATGGAAAACCGATC
GATATATCGGACGATGATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.802

100

0.574
  ssb Latilactobacillus sakei subsp. sakei 23K

50

100

0.509

Multiple sequence alignment