Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KO02_RS01185 Genome accession   NZ_CP009278
Coordinates   247009..248394 (+) Length   461 a.a.
NCBI ID   WP_038695129.1    Uniprot ID   A0A088EW74
Organism   Sphingobacterium sp. ML3W     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 242009..253394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KO02_RS01160 (KO02_01215) - 242555..244306 (+) 1752 WP_038695125.1 serine hydrolase domain-containing protein -
  KO02_RS01165 (KO02_01220) - 244324..245481 (+) 1158 WP_235212320.1 dipeptidase -
  KO02_RS24315 (KO02_01225) - 245478..245756 (-) 279 WP_038695126.1 DUF1294 domain-containing protein -
  KO02_RS01175 (KO02_01230) - 245791..246411 (-) 621 WP_038695127.1 hypothetical protein -
  KO02_RS01180 (KO02_01235) - 246411..246911 (-) 501 WP_038695128.1 RNA polymerase sigma factor -
  KO02_RS01185 (KO02_01240) radA 247009..248394 (+) 1386 WP_038695129.1 DNA repair protein RadA Machinery gene
  KO02_RS01190 (KO02_01245) - 248460..249140 (-) 681 WP_038695130.1 peroxiredoxin family protein -
  KO02_RS01195 (KO02_01250) nagB 249575..251494 (+) 1920 WP_038695131.1 glucosamine-6-phosphate deaminase -
  KO02_RS22675 - 251793..252731 (-) 939 WP_144243238.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50369.85 Da        Isoelectric Point: 6.7502

>NTDB_id=127964 KO02_RS01185 WP_038695129.1 247009..248394(+) (radA) [Sphingobacterium sp. ML3W]
MAKTKSAYFCQSCGFESAKWLGQCPSCKQWNSLVEEIVEKASSKVPEWRSTSLTSSPKRANKAAVIHEIVYQDESRILTP
DQEFNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQLALSIPQVKTLYISGEESEQQIKMRAERLSQSSNANCYILTETSTQ
NIFKQIEIVQPDVIVIDSIQTLHSSQIESAPGSVSQVRECTAELLRFAKETSTPVLIVGHITKDGSIAGPKVLEHMVDTV
LQFEGDRHHVYRILRAVKNRFGSASELGIYEMQGTGLREVSNPSEIMISQRDAPVSGVSIAAMLEGARPMMIEVQALVSN
SAFGNPQRTSTGFDTKRLSMLLAVLEKRFGFRLSAQDVFLNIAGGLRVEDPAIDLAVIVAIISSQQDIAVKTSMTFAGEV
GLSGEIRAVNRIEQRIAEAEKLGFEGIFISKFNTKGLDAKKYNIAIRPIATLEDVFRALFG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=127964 KO02_RS01185 WP_038695129.1 247009..248394(+) (radA) [Sphingobacterium sp. ML3W]
ATGGCAAAGACAAAATCAGCATATTTCTGTCAAAGTTGTGGGTTTGAATCTGCAAAATGGTTGGGACAGTGTCCTTCCTG
TAAACAATGGAATTCTCTCGTAGAAGAAATTGTAGAGAAAGCAAGTTCGAAAGTTCCAGAATGGCGAAGTACCTCCTTAA
CCTCATCTCCTAAGCGAGCAAATAAAGCCGCAGTTATCCATGAGATTGTGTATCAAGATGAATCACGTATTTTAACTCCC
GATCAGGAATTTAACCGTGTATTAGGTGGGGGGATAGTCCCAGGATCTTTAGTACTGATAGGTGGTGAACCGGGCATTGG
TAAATCTACCTTAATGTTACAATTAGCCTTATCGATTCCACAGGTAAAGACTTTATATATTTCTGGAGAAGAAAGTGAGC
AGCAGATCAAGATGAGAGCCGAGCGTCTATCACAATCTTCCAATGCGAACTGTTATATATTGACCGAAACTTCAACACAA
AATATATTCAAGCAGATTGAAATCGTACAACCCGATGTCATCGTTATCGATTCCATTCAAACGCTACATTCTTCTCAAAT
AGAATCAGCACCAGGTTCGGTATCGCAGGTAAGAGAGTGTACAGCAGAATTGTTGCGGTTTGCAAAAGAAACGAGTACAC
CAGTTTTGATTGTAGGGCATATTACAAAAGACGGCTCTATTGCTGGGCCCAAGGTGTTAGAACATATGGTAGATACGGTC
CTGCAGTTTGAGGGTGATCGACACCATGTATACCGTATATTGAGAGCAGTGAAAAACCGTTTTGGTTCAGCATCAGAATT
GGGTATATATGAGATGCAAGGTACTGGTCTGAGAGAAGTATCCAATCCTTCTGAAATCATGATCTCGCAACGAGATGCAC
CTGTAAGTGGGGTATCGATTGCAGCCATGTTAGAAGGTGCTCGTCCAATGATGATCGAGGTACAGGCATTGGTTAGTAAT
TCTGCTTTTGGAAATCCACAGCGTACGTCCACAGGTTTCGATACCAAAAGATTAAGTATGCTACTTGCAGTACTGGAGAA
ACGATTTGGTTTTCGTCTGAGTGCACAGGATGTTTTCCTAAATATTGCAGGAGGATTGCGCGTTGAAGATCCAGCAATAG
ATTTGGCTGTCATTGTTGCTATCATATCTTCACAACAAGATATTGCTGTGAAAACGAGTATGACTTTTGCTGGTGAAGTA
GGTTTATCTGGAGAGATTCGAGCAGTGAACCGGATAGAGCAACGTATTGCGGAAGCTGAAAAATTGGGTTTTGAGGGTAT
TTTTATTTCAAAATTTAATACAAAAGGCTTAGATGCTAAAAAATATAATATTGCAATCCGTCCTATTGCGACGCTTGAAG
ACGTATTTAGGGCTTTATTTGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(347-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A088EW74

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.916

100

0.531
  radA Streptococcus mitis NCTC 12261

51.627

100

0.516
  radA Streptococcus pneumoniae Rx1

51.627

100

0.516
  radA Streptococcus pneumoniae D39

51.627

100

0.516
  radA Streptococcus pneumoniae R6

51.627

100

0.516
  radA Streptococcus pneumoniae TIGR4

51.627

100

0.516
  radA Streptococcus mitis SK321

51.41

100

0.514

Multiple sequence alignment