Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   JV59_RS03625 Genome accession   NZ_CP009264
Coordinates   741146..742540 (+) Length   464 a.a.
NCBI ID   WP_019275536.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain OCN014     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 736146..747540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JV59_RS03610 (JV59_27855) - 736801..737769 (+) 969 WP_038510244.1 M23 family metallopeptidase -
  JV59_RS26465 - 737655..738095 (+) 441 WP_129542192.1 bactofilin family protein -
  JV59_RS03620 (JV59_27865) uvrB 738852..740882 (+) 2031 WP_038510247.1 excinuclease ABC subunit UvrB -
  JV59_RS03625 (JV59_27870) luxO 741146..742540 (+) 1395 WP_019275536.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  JV59_RS03630 (JV59_27875) luxU 742544..742888 (+) 345 WP_029236080.1 quorum-sensing phosphorelay protein LuxU -
  JV59_RS03635 (JV59_27880) - 742874..743761 (-) 888 WP_019275535.1 YvcK family protein -
  JV59_RS03640 (JV59_27885) moaA 744067..745056 (+) 990 WP_038510252.1 GTP 3',8-cyclase MoaA -
  JV59_RS03645 (JV59_27890) moaB 745148..745660 (+) 513 WP_006963014.1 molybdenum cofactor biosynthesis protein B -
  JV59_RS03650 (JV59_27895) moaC 745673..746152 (+) 480 WP_006963013.1 cyclic pyranopterin monophosphate synthase MoaC -
  JV59_RS03655 (JV59_27900) moaD 746149..746394 (+) 246 WP_038510255.1 molybdopterin synthase sulfur carrier subunit -
  JV59_RS03660 (JV59_27905) moaE 746394..746849 (+) 456 WP_006963011.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 51738.07 Da        Isoelectric Point: 5.8826

>NTDB_id=127851 JV59_RS03625 WP_019275536.1 741146..742540(+) (luxO) [Vibrio coralliilyticus strain OCN014]
MQHNTQTQKSKYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNFRTPDLILLDLRLPDMTGMDVLHAVKQKM
PDVPVIFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSHTMQAVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGDDVIEIAYSLLGFMSKEEGKDFVRLAPEVVSRFAQYEWPGNVRQLQNVLRNVVVLNNGENISMDMLPPPLNQPVENQI
RVDLQDKDSFSVHDIFPLWLTEKKAIEQAIQACEGNIPKAAGYLDVSPSTLYRKLQNWNTKETQ

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=127851 JV59_RS03625 WP_019275536.1 741146..742540(+) (luxO) [Vibrio coralliilyticus strain OCN014]
ATGCAACATAATACGCAAACACAAAAGTCCAAATATCTTTTGATGGTTGAAGATACTGCGTCGGTCGCGGCGTTGTACCG
TTCTTATCTCACCCCTCTGGGTATCGATATCAACATTGTTGGTACCGGGCGTGATGCCATTGAAAGTCTCAACTTTCGCA
CTCCTGATTTAATCCTATTGGACCTTCGTCTTCCCGACATGACAGGTATGGATGTTTTGCATGCAGTGAAACAGAAAATG
CCTGATGTTCCAGTGATCTTCATGACGGCCCATGGCTCGATTGATACCGCTGTAGAAGCGATGCGTCATGGTGCTCAGGA
TTTCCTTATCAAACCGTGTGAAGCGGACCGACTCCGTGTAACGGTTAACAACGCTATTCGCAAAGCGACCAAGTTGAAAA
ATGAAGCGGATAATCCGGGCAACCAGAATTATCAAGGCTTTATCGGTAGTAGCCATACTATGCAGGCTGTGTATCGTACC
ATCGACTCCGCCGCATCCAGTAAAGCCAGTATTTTCATCACTGGCGAAAGTGGTACGGGTAAAGAGGTATGTGCGGAGGC
CATTCATGCGGCAAGTAAGCGTGGTGACAAGCCCTTCATCGCGATCAACTGTGCTGCCATTCCAAAAGATCTGATTGAAA
GTGAATTGTTTGGTCACGTGAAAGGCGCGTTTACTGGCGCAGCCACTGATCGACAAGGCGCGGCTGAGTTGGCTGACGGA
GGCACGTTGTTCCTTGACGAGCTGTGTGAGATGGATCTGGATCTGCAAACTAAGCTACTACGCTTTATTCAGACGGGTAC
CTTCCAGAAAGTCGGTTCTTCGAAAATGAAAAGCGTCGATGTGCGTTTCGTCTGTGCAACCAACCGGGACCCTTGGAAAG
AGGTGCAGGAAGGTCGCTTCCGTGAAGACTTATATTATCGTTTATACGTAATTCCTTTGCACCTACCTCCTTTGAGGGAG
CGTGGCGATGATGTCATAGAAATTGCTTATTCTCTGCTAGGCTTTATGTCTAAAGAGGAAGGAAAAGACTTTGTCCGGCT
GGCACCAGAAGTTGTGAGCCGCTTCGCTCAATACGAGTGGCCGGGTAATGTTCGTCAATTGCAAAACGTACTGAGAAACG
TCGTGGTTCTTAACAACGGTGAAAACATCTCCATGGATATGTTGCCGCCTCCATTGAATCAGCCAGTCGAAAATCAGATC
AGGGTAGACTTGCAGGACAAAGACAGTTTTTCTGTGCATGACATTTTCCCTCTGTGGTTAACAGAGAAGAAAGCTATTGA
GCAAGCGATTCAGGCCTGTGAAGGGAATATTCCTAAAGCCGCGGGTTATTTAGATGTCAGTCCATCAACGCTTTATCGCA
AGCTGCAAAACTGGAACACGAAGGAAACACAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-457)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.946

96.552

0.849
  pilR Pseudomonas aeruginosa PAK

38.085

96.767

0.369

Multiple sequence alignment