Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   VV93_RS13825 Genome accession   NZ_CP009261
Coordinates   3003202..3003792 (-) Length   196 a.a.
NCBI ID   WP_011079353.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 93U204     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2998202..3008792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV93_RS13800 (VV93_v1c27170) aroB 2998475..2999566 (-) 1092 WP_011079358.1 3-dehydroquinate synthase -
  VV93_RS13805 (VV93_v1c27180) aroK 2999599..3000117 (-) 519 WP_011079357.1 shikimate kinase AroK -
  VV93_RS13810 (VV93_v1c27190) pilQ 3000319..3002103 (-) 1785 WP_011151276.1 type IV pilus secretin PilQ Machinery gene
  VV93_RS13815 (VV93_v1c27200) pilP 3002117..3002629 (-) 513 WP_011079355.1 pilus assembly protein PilP Machinery gene
  VV93_RS13820 (VV93_v1c27210) pilO 3002619..3003209 (-) 591 WP_011079354.1 type 4a pilus biogenesis protein PilO Machinery gene
  VV93_RS13825 (VV93_v1c27220) pilN 3003202..3003792 (-) 591 WP_011079353.1 PilN domain-containing protein Machinery gene
  VV93_RS13830 (VV93_v1c27230) pilM 3003782..3004789 (-) 1008 WP_011151279.1 type IV pilus assembly protein PilM Machinery gene
  VV93_RS13835 (VV93_v1c27240) - 3004929..3007442 (+) 2514 WP_039554841.1 penicillin-binding protein 1A -
  VV93_RS13840 (VV93_v1c27250) oxyR 3007513..3008412 (-) 900 WP_039554843.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22672.91 Da        Isoelectric Point: 7.6441

>NTDB_id=127827 VV93_RS13825 WP_011079353.1 3003202..3003792(-) (pilN) [Vibrio vulnificus strain 93U204]
MQHKINLLPWREHKREEHKRRFVSLVALGALIAVGIQWGIGQYFSYQQRLQQERLDYLTHYIAQLDQRIQAMNIAKEEHS
QILARLKVVESLQAERNKTTAFMNLMTELIPEGVYVDKIKMNTNDVELAGISDSTARLATMLDNLERSTFLKEVEMHSIV
HDKKRFGKSFQTFTVSFVFDEHADSANTLAKEGNHG

Nucleotide


Download         Length: 591 bp        

>NTDB_id=127827 VV93_RS13825 WP_011079353.1 3003202..3003792(-) (pilN) [Vibrio vulnificus strain 93U204]
ATGCAGCATAAGATCAACCTGTTACCTTGGCGTGAACACAAGCGTGAGGAGCATAAACGTCGTTTTGTCAGTCTGGTCGC
ATTAGGTGCCCTGATCGCGGTCGGTATTCAGTGGGGCATTGGCCAGTACTTTTCATACCAACAACGTTTGCAGCAAGAGC
GTCTCGATTATCTTACCCACTATATCGCACAGTTGGATCAGCGTATCCAAGCGATGAACATTGCCAAGGAAGAGCATAGC
CAGATCCTCGCTCGACTCAAGGTTGTCGAGTCGCTTCAAGCGGAACGCAACAAAACCACCGCATTTATGAACTTGATGAC
GGAACTGATCCCAGAGGGGGTGTATGTCGACAAGATCAAAATGAACACCAACGACGTTGAGTTGGCTGGCATAAGCGATA
GTACCGCTCGACTCGCCACCATGTTGGATAATTTGGAACGTTCCACCTTTCTAAAAGAAGTGGAAATGCATTCAATTGTT
CATGACAAGAAGCGTTTTGGTAAGAGCTTCCAGACGTTTACCGTCTCTTTTGTGTTTGATGAACATGCCGATTCTGCCAA
TACGTTGGCCAAGGAGGGGAATCATGGCTAG

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(102-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

67.956

92.347

0.628
  pilN Vibrio cholerae strain A1552

63.277

90.306

0.571

Multiple sequence alignment