Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HPYLSS1_RS07225 Genome accession   NZ_CP009259
Coordinates   1471573..1472148 (-) Length   191 a.a.
NCBI ID   WP_077232506.1    Uniprot ID   -
Organism   Helicobacter pylori SS1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1466573..1477148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPYLSS1_RS07215 (HPYLSS1_01397) - 1468884..1469474 (-) 591 Protein_1368 restriction endonuclease subunit S -
  HPYLSS1_RS07220 (HPYLSS1_01398) - 1469504..1471540 (-) 2037 WP_077232505.1 VRR-NUC domain-containing protein -
  HPYLSS1_RS07225 (HPYLSS1_01399) comFC 1471573..1472148 (-) 576 WP_077232506.1 ComF family protein Machinery gene
  HPYLSS1_RS07230 (HPYLSS1_01400) tmk 1472136..1472711 (-) 576 WP_077232507.1 dTMP kinase -
  HPYLSS1_RS07235 (HPYLSS1_01401) coaD 1472713..1473186 (-) 474 WP_077232508.1 pantetheine-phosphate adenylyltransferase -
  HPYLSS1_RS07240 (HPYLSS1_01402) - 1473186..1473749 (-) 564 WP_000780109.1 UbiX family flavin prenyltransferase -
  HPYLSS1_RS07245 (HPYLSS1_01403) flgA 1473759..1474415 (-) 657 WP_077232509.1 flagellar basal body P-ring formation chaperone FlgA -
  HPYLSS1_RS07250 (HPYLSS1_01404) uvrD 1474412..1476457 (-) 2046 WP_173668921.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21308.83 Da        Isoelectric Point: 8.6728

>NTDB_id=127793 HPYLSS1_RS07225 WP_077232506.1 1471573..1472148(-) (comFC) [Helicobacter pylori SS1]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRANNPRDFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=127793 HPYLSS1_RS07225 WP_077232506.1 1471573..1472148(-) (comFC) [Helicobacter pylori SS1]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAGAGCAAATACG
CGCTGATTGGTTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCAGAGTTTGTGAAAATCCTGCAAGAACAGGGT
CTGAATATTCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCTTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAACAACCCACGGGATTTCACCTTCAAAGGCGATGAAAGTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCACACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

97.906

100

0.979
  ctsW Campylobacter jejuni subsp. jejuni 81-176

36.269

100

0.366

Multiple sequence alignment