Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   IX87_RS11940 Genome accession   NZ_CP009257
Coordinates   2356467..2357102 (+) Length   211 a.a.
NCBI ID   WP_000472270.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB30     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2351467..2362102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IX87_RS11925 (IX87_12195) adeT2 2352527..2353513 (-) 987 WP_000712910.1 putative multidrug efflux protein AdeT2 -
  IX87_RS11930 (IX87_12200) - 2353593..2354408 (-) 816 WP_000547770.1 NAD-dependent epimerase/dehydratase family protein -
  IX87_RS11935 (IX87_12205) recG 2354429..2356474 (+) 2046 WP_000204959.1 ATP-dependent DNA helicase RecG -
  IX87_RS11940 (IX87_12210) comF 2356467..2357102 (+) 636 WP_000472270.1 ComF family protein Machinery gene
  IX87_RS11945 (IX87_12215) - 2357105..2357506 (-) 402 WP_000849705.1 NUDIX domain-containing protein -
  IX87_RS11950 (IX87_12220) - 2357521..2358102 (-) 582 WP_001084311.1 TIGR00730 family Rossman fold protein -
  IX87_RS11955 (IX87_12225) - 2358260..2359273 (+) 1014 WP_000888321.1 CorA family divalent cation transporter -
  IX87_RS11960 (IX87_12230) - 2359343..2359630 (-) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  IX87_RS11965 (IX87_12235) - 2359642..2360283 (-) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  IX87_RS11970 (IX87_12240) - 2360310..2360990 (-) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  IX87_RS11975 (IX87_12245) mlaE 2360990..2361766 (-) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24581.75 Da        Isoelectric Point: 9.5738

>NTDB_id=127701 IX87_RS11940 WP_000472270.1 2356467..2357102(+) (comF) [Acinetobacter baumannii strain AB30]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALCQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=127701 IX87_RS11940 WP_000472270.1 2356467..2357102(+) (comF) [Acinetobacter baumannii strain AB30]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGAGGTTTTAATCAATCCTTATTACTTGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGGTTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTATG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.526

100

0.995
  comF Acinetobacter baumannii D1279779

98.578

100

0.986

Multiple sequence alignment