Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   IX87_RS02215 Genome accession   NZ_CP009257
Coordinates   408790..409170 (-) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB30     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 403790..414170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IX87_RS02185 (IX87_02275) tadA 403908..404411 (-) 504 WP_000033177.1 tRNA adenosine(34) deaminase TadA -
  IX87_RS02190 (IX87_02280) - 404418..405542 (-) 1125 WP_086241960.1 enoyl-CoA hydratase/isomerase family protein -
  IX87_RS02195 (IX87_02285) ung 405539..406252 (-) 714 WP_001177528.1 uracil-DNA glycosylase -
  IX87_RS02200 (IX87_02290) - 406303..406899 (-) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  IX87_RS02205 (IX87_02295) gspK 407130..408089 (-) 960 WP_000301471.1 type II secretion system minor pseudopilin GspK -
  IX87_RS02210 (IX87_02300) xcpW 408089..408790 (-) 702 WP_000594590.1 type II secretion system minor pseudopilin GspJ Machinery gene
  IX87_RS02215 (IX87_02305) xcpV 408790..409170 (-) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  IX87_RS02220 (IX87_02310) - 409160..409714 (-) 555 WP_000841373.1 type II secretion system protein -
  IX87_RS02225 (IX87_02315) - 409724..410332 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  IX87_RS02230 (IX87_02320) - 410370..411143 (-) 774 WP_000497301.1 TatD family hydrolase -
  IX87_RS02235 (IX87_02325) - 411161..411502 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  IX87_RS02240 (IX87_02330) - 411514..412494 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  IX87_RS02245 (IX87_02335) kdsB 412506..413267 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=127691 IX87_RS02215 WP_000836911.1 408790..409170(-) (xcpV) [Acinetobacter baumannii strain AB30]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=127691 IX87_RS02215 WP_000836911.1 408790..409170(-) (xcpV) [Acinetobacter baumannii strain AB30]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1

Multiple sequence alignment