Detailed information NTG0127690

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: IX87_RS02210
• Genome accession: NZ_CP009257
• Coordinates: 408089..408790 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594590.1
• Uniprot ID: A0A427R546
• Organism: Acinetobacter baumannii strain AB30
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 403089..413790

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IX87_RS02180 (IX87_02270)	-	403395..403838 (-)	444	WP_001246674.1	SRPBCC family protein	-
IX87_RS02185 (IX87_02275)	tadA	403908..404411 (-)	504	WP_000033177.1	tRNA adenosine(34) deaminase TadA	-
IX87_RS02190 (IX87_02280)	-	404418..405542 (-)	1125	WP_086241960.1	enoyl-CoA hydratase/isomerase family protein	-
IX87_RS02195 (IX87_02285)	ung	405539..406252 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
IX87_RS02200 (IX87_02290)	-	406303..406899 (-)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
IX87_RS02205 (IX87_02295)	gspK	407130..408089 (-)	960	WP_000301471.1	type II secretion system minor pseudopilin GspK	-
IX87_RS02210 (IX87_02300)	xcpW	408089..408790 (-)	702	WP_000594590.1	type II secretion system minor pseudopilin GspJ	Machinery gene
IX87_RS02215 (IX87_02305)	xcpV	408790..409170 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
IX87_RS02220 (IX87_02310)	-	409160..409714 (-)	555	WP_000841373.1	type II secretion system protein	-
IX87_RS02225 (IX87_02315)	-	409724..410332 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
IX87_RS02230 (IX87_02320)	-	410370..411143 (-)	774	WP_000497301.1	TatD family hydrolase	-
IX87_RS02235 (IX87_02325)	-	411161..411502 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
IX87_RS02240 (IX87_02330)	-	411514..412494 (-)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
IX87_RS02245 (IX87_02335)	kdsB	412506..413267 (-)	762	WP_000680697.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26627.52 Da
• Isoelectric Point: 9.3468

>NTDB_id=127690 IX87_RS02210 WP_000594590.1 408089..408790(-) (xcpW) [Acinetobacter baumannii strain AB30]
MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWTYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=127690 IX87_RS02210 WP_000594590.1 408089..408790(-) (xcpW) [Acinetobacter baumannii strain AB30]
ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGACTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A427R546

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991