Detailed information NTG0127687

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IX88_RS18950
• Genome accession: NZ_CP009256
• Coordinates: 807805..808665 (-)
• Length: 286 a.a.
• NCBI ID: WP_031999398.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain AB31
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 802805..813665

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IX88_RS03855 (IX88_03905)	-	803696..805006 (+)	1311	WP_031999399.1	tetratricopeptide repeat protein	-
IX88_RS03860 (IX88_03910)	-	805083..805409 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
IX88_RS03865 (IX88_03915)	rlmB	805511..806260 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
IX88_RS03870 (IX88_03920)	-	806296..807210 (+)	915	WP_000075011.1	DMT family transporter	-
IX88_RS03875 (IX88_03925)	coaE	807207..807803 (-)	597	WP_000874125.1	dephospho-CoA kinase	-
IX88_RS18950 (IX88_03930)	pilD	807805..808665 (-)	861	WP_031999398.1	A24 family peptidase	Machinery gene
IX88_RS03885 (IX88_03935)	pilC	808665..809891 (-)	1227	WP_031999397.1	type II secretion system F family protein	Machinery gene
IX88_RS03890 (IX88_03940)	pilB	809921..811633 (-)	1713	WP_002058663.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IX88_RS03895 (IX88_03945)	tpiA	811924..812718 (+)	795	WP_000016939.1	triose-phosphate isomerase	-
IX88_RS03900 (IX88_03950)	secG	812731..813060 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32125.53 Da
• Isoelectric Point: 7.1041

>NTDB_id=127687 IX88_RS18950 WP_031999398.1 807805..808665(-) (pilD) [Acinetobacter baumannii strain AB31]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHERLTLNKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLILTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=127687 IX88_RS18950 WP_031999398.1 807805..808665(-) (pilD) [Acinetobacter baumannii strain AB31]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCCGAGCAACCGATTATTGATCATGAGAGGTTAACTTTAAATAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGCCATTGCCAACACCCGATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCATCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	99.65	100	0.997
pilD	Acinetobacter nosocomialis M2	97.902	100	0.979
pilD	Vibrio cholerae strain A1552	53.309	95.105	0.507
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	48.106	92.308	0.444