Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   H70357_RS33925 Genome accession   NZ_CP009241
Coordinates   7676596..7677102 (-) Length   168 a.a.
NCBI ID   WP_038598246.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL H7-0357     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 7671596..7682102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H70357_RS33910 (H70357_35245) - 7673305..7675287 (-) 1983 WP_038598244.1 DNA mismatch repair protein MutS -
  H70357_RS33915 (H70357_35250) - 7675693..7676067 (-) 375 WP_038598245.1 VOC family protein -
  H70357_RS33920 (H70357_35255) rpsR 7676302..7676574 (-) 273 WP_019914552.1 30S ribosomal protein S18 -
  H70357_RS33925 (H70357_35260) ssbA 7676596..7677102 (-) 507 WP_038598246.1 single-stranded DNA-binding protein Machinery gene
  H70357_RS33930 (H70357_35265) rpsF 7677150..7677434 (-) 285 WP_038598251.1 30S ribosomal protein S6 -
  H70357_RS33935 (H70357_35270) - 7677650..7677847 (+) 198 WP_038598253.1 YjzC family protein -
  H70357_RS33945 (H70357_35280) - 7678335..7678541 (-) 207 WP_038598254.1 DUF951 domain-containing protein -
  H70357_RS33950 (H70357_35285) - 7678541..7679560 (-) 1020 WP_156131052.1 mechanosensitive ion channel family protein -
  H70357_RS33955 (H70357_35290) - 7679565..7679840 (-) 276 WP_038598256.1 DUF3343 domain-containing protein -
  H70357_RS33960 (H70357_35295) yyaC 7679993..7680601 (+) 609 WP_038598257.1 spore protease YyaC -
  H70357_RS33965 (H70357_35300) - 7680573..7681073 (-) 501 WP_038598258.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18451.21 Da        Isoelectric Point: 4.8280

>NTDB_id=127555 H70357_RS33925 WP_038598246.1 7676596..7677102(-) (ssbA) [Paenibacillus sp. FSL H7-0357]
MLNRIILIGRLTRDPELRYTPAGVAVTQFTLAVDRNFTGQNGEREADFIPVVTWRQLAETCANYLRKGRLAAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESSQNREGGNTPSGAGTPEEPAYGGGGGNSGRGNSNNFTRNNNNNQDPFSGDGKPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=127555 H70357_RS33925 WP_038598246.1 7676596..7677102(-) (ssbA) [Paenibacillus sp. FSL H7-0357]
TTGTTGAACCGTATCATTCTGATCGGTCGGTTGACCCGTGACCCGGAACTTCGTTATACTCCCGCTGGTGTTGCCGTAAC
GCAGTTTACACTTGCTGTAGACCGCAACTTTACGGGCCAGAACGGTGAACGCGAGGCGGACTTCATCCCGGTAGTAACCT
GGAGACAGCTGGCTGAGACCTGTGCCAATTACTTGCGCAAAGGACGACTGGCAGCCGTGGAAGGACGCATCCAAGTACGG
AATTACGAGAATAACGAAGGTAAACGTGTATACGTAACCGAAGTCATTGCCGATAATGTCCGTTTCCTGGAATCTTCGCA
GAACCGTGAAGGCGGAAATACACCAAGTGGTGCAGGTACTCCTGAAGAACCAGCCTATGGCGGTGGCGGCGGTAACAGTG
GACGCGGAAATAGCAATAATTTCACGCGTAACAACAACAATAATCAAGATCCTTTTTCGGGCGATGGAAAACCGATCGAT
ATATCGGACGATGATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.884

100

0.613
  ssb Latilactobacillus sakei subsp. sakei 23K

49.123

100

0.5

Multiple sequence alignment