Detailed information NTG0127510

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: SAH002_RS10590
• Genome accession: NZ_CP011329
• Coordinates: 2124584..2125693 (+)
• Length: 369 a.a.
• NCBI ID: WP_000264863.1
• Uniprot ID: Q8DWQ8
• Organism: Streptococcus agalactiae strain H002
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2119584..2130693

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SAH002_RS10565 (SAH002_10585)	-	2119956..2120795 (-)	840	WP_000181757.1	energy-coupling factor ABC transporter ATP-binding protein	-
SAH002_RS10570 (SAH002_10590)	pgsA	2120795..2121337 (-)	543	WP_000976003.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
SAH002_RS10575 (SAH002_10595)	yfmH	2121460..2122743 (-)	1284	WP_000217754.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
SAH002_RS10580 (SAH002_10600)	yfmF	2122745..2123989 (-)	1245	WP_000706188.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
SAH002_RS10585 (SAH002_10605)	yaaA	2124228..2124581 (+)	354	WP_000384871.1	S4 domain-containing protein YaaA	-
SAH002_RS10590 (SAH002_10610)	recF	2124584..2125693 (+)	1110	WP_000264863.1	DNA replication/repair protein RecF	Machinery gene
SAH002_RS10595 (SAH002_10615)	-	2125705..2126571 (-)	867	WP_000398683.1	GRP family sugar transporter	-
SAH002_RS10600 (SAH002_10620)	-	2126627..2127289 (-)	663	WP_001865840.1	helix-turn-helix transcriptional regulator	-
SAH002_RS10605 (SAH002_10625)	guaB	2127364..2128845 (-)	1482	WP_000073440.1	IMP dehydrogenase	-
SAH002_RS10610 (SAH002_10630)	-	2129002..2129487 (-)	486	WP_001034427.1	arginine repressor	-
SAH002_RS10615 (SAH002_10635)	-	2129497..2130177 (-)	681	WP_000628851.1	Crp/Fnr family transcriptional regulator	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 42526.35 Da
• Isoelectric Point: 7.3132

>NTDB_id=127510 SAH002_RS10590 WP_000264863.1 2124584..2125693(+) (recF) [Streptococcus agalactiae strain H002]
MWIKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKELVHFKHHDVQITGEVIRKSGH
LNLDIQLSEKGRITKVNHLKQAKLSDYIGAMTVVLFAPEDLQLVKGAPSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQR
NTYLKTTNNVDKTFLTVLDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEFTDKSSIREHFLN
QLSKSHSRDIFKKNTSIGPHRDDITFFINDINATFASQGQQRSLILSLKLAEIELIKTVTNDYPILLLDDVMSELDNHRQ
LKLLEGIKENVQTFITTTSLEHLSALPDQLKIFNVSDGTISINEKKATD

Nucleotide

• Length: 1110 bp

>NTDB_id=127510 SAH002_RS10590 WP_000264863.1 2124584..2125693(+) (recF) [Streptococcus agalactiae strain H002]
ATGTGGATAAAAAATATTTCTTTAAAACATTATCGTAATTATGAAGAAGCACAAGTAGATTTTTCACCCAACCTCAATAT
TTTCATTGGCCGCAATGCTCAAGGAAAGACAAATTTTTTAGAAGCAATCTACTTCTTGGCTTTGACTCGAAGTCACCGTA
CCCGTTCTGATAAAGAACTTGTACATTTTAAACACCATGATGTACAAATTACAGGTGAGGTAATCCGCAAAAGTGGCCAT
CTTAACTTAGATATTCAATTATCTGAAAAAGGAAGAATCACTAAAGTTAACCATCTTAAACAGGCAAAATTATCTGATTA
TATTGGGGCTATGACTGTCGTACTTTTTGCCCCTGAAGATCTTCAATTAGTTAAAGGTGCACCTAGTCTAAGACGAAAAT
TTTTAGATATAGATATTGGACAAATTAAGCCAACGTACTTAGCTGAACTTTCAAATTACAATCATGTATTAAAACAAAGA
AACACTTATCTAAAAACTACTAATAACGTCGACAAAACTTTTTTAACAGTCCTTGATGAACAATTAGCTGATTATGGAAG
TCGTGTCATTGAACACCGTTTTGATTTTATCCAAGCCCTAAATGATGAAGCGGACAAACATCACTACATTATCAGTACTG
AGTTAGAACATTTATCTATTCACTACAAATCGTCAATAGAGTTTACAGATAAGTCAAGTATTAGGGAACATTTTTTAAAC
CAATTATCTAAAAGCCACTCAAGAGACATCTTTAAGAAAAACACAAGCATCGGACCTCATCGTGATGATATTACTTTCTT
TATTAATGATATCAATGCTACTTTTGCTAGCCAAGGGCAACAAAGAAGCCTTATTTTATCATTGAAATTAGCAGAAATTG
AGCTAATAAAAACCGTTACCAACGATTATCCGATTCTCTTACTTGACGACGTCATGAGTGAACTTGACAACCATCGTCAA
CTAAAACTCTTAGAGGGAATCAAAGAGAATGTTCAAACATTTATTACTACAACAAGTTTAGAACATTTAAGTGCTTTACC
TGATCAACTCAAAATCTTTAACGTTAGTGATGGTACTATTAGTATTAATGAAAAAAAAGCAACAGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-359)

3D structure

• AlphaFold DB: Q8DWQ8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	63.085	98.374	0.621
recF	Bacillus subtilis subsp. subtilis str. 168	44.565	99.729	0.444