Detailed information
Bioinformatically predicted
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | JT17_RS04305 | Genome accession | NZ_CP009237 |
| Coordinates | 896866..897447 (+) | Length | 193 a.a. |
| NCBI ID | WP_021110392.1 | Uniprot ID | A0A084ELH5 |
| Organism | Glaesserella parasuis strain KL0318 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 891866..902447
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JT17_RS04265 (JT17_04430) | gltX | 892563..894002 (-) | 1440 | WP_021110394.1 | glutamate--tRNA ligase | - |
| JT17_RS04290 (JT17_04455) | - | 894836..895072 (+) | 237 | WP_015940086.1 | hypothetical protein | - |
| JT17_RS04295 (JT17_04460) | - | 895178..895405 (+) | 228 | WP_016528332.1 | hypothetical protein | - |
| JT17_RS04300 (JT17_04465) | - | 895606..896766 (+) | 1161 | WP_035520425.1 | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | - |
| JT17_RS04305 (JT17_04470) | pilF | 896866..897447 (+) | 582 | WP_021110392.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| JT17_RS04310 (JT17_04475) | - | 897508..898443 (+) | 936 | WP_026916781.1 | KpsF/GutQ family sugar-phosphate isomerase | - |
| JT17_RS04315 (JT17_04480) | greB | 898443..898922 (+) | 480 | WP_010786058.1 | transcription elongation factor GreB | - |
| JT17_RS04335 (JT17_04500) | - | 899456..900754 (+) | 1299 | WP_044009551.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| JT17_RS04340 (JT17_04505) | - | 900841..901374 (-) | 534 | WP_015940082.1 | TIGR00645 family protein | - |
| JT17_RS04345 (JT17_04510) | - | 901463..902101 (-) | 639 | WP_044009167.1 | nitroreductase family protein | - |
Sequence
Protein
Download Length: 193 a.a. Molecular weight: 22339.24 Da Isoelectric Point: 8.0872
>NTDB_id=127473 JT17_RS04305 WP_021110392.1 896866..897447(+) (pilF) [Glaesserella parasuis strain KL0318]
MTFAKFFRNLTACSVALWLVACANQTTQVDFNRSEAVKARINLALAYLEQSDFPKAKENIDKALEHDVKDYLPHSVLAYY
YQQTGDNQKAEEAYQQALKLSKTQSKNNQVRPDVLNNYGTFLCKQKQFDKAYQQFETALTSQEAYYNQADTLENIALCAN
MKKDIEKQKTALSQLEKIDKSRAERLYNFMEIR
MTFAKFFRNLTACSVALWLVACANQTTQVDFNRSEAVKARINLALAYLEQSDFPKAKENIDKALEHDVKDYLPHSVLAYY
YQQTGDNQKAEEAYQQALKLSKTQSKNNQVRPDVLNNYGTFLCKQKQFDKAYQQFETALTSQEAYYNQADTLENIALCAN
MKKDIEKQKTALSQLEKIDKSRAERLYNFMEIR
Nucleotide
Download Length: 582 bp
>NTDB_id=127473 JT17_RS04305 WP_021110392.1 896866..897447(+) (pilF) [Glaesserella parasuis strain KL0318]
ATGACCTTTGCAAAATTTTTCCGTAATTTGACCGCTTGTAGCGTGGCATTATGGCTTGTTGCTTGTGCGAACCAAACTAC
TCAGGTGGATTTTAACCGCTCGGAAGCCGTCAAAGCTCGCATTAATTTGGCCCTTGCTTACCTTGAACAATCTGATTTTC
CAAAAGCGAAAGAGAACATTGACAAAGCGCTTGAACACGATGTAAAAGACTACCTACCGCACTCTGTGCTTGCCTATTAT
TACCAACAAACTGGCGATAACCAAAAAGCAGAAGAAGCCTACCAGCAAGCCTTGAAGTTAAGTAAAACACAGAGCAAAAA
CAATCAAGTTCGCCCTGATGTATTGAATAACTACGGTACCTTTCTGTGCAAACAAAAACAGTTCGACAAAGCCTATCAGC
AATTTGAAACGGCATTAACCAGTCAAGAAGCCTATTACAATCAAGCAGATACACTAGAAAATATCGCCTTATGTGCCAAT
ATGAAGAAGGATATTGAGAAGCAAAAAACAGCACTATCTCAACTTGAGAAAATAGATAAATCAAGAGCAGAACGACTATA
TAATTTCATGGAGATTAGATAG
ATGACCTTTGCAAAATTTTTCCGTAATTTGACCGCTTGTAGCGTGGCATTATGGCTTGTTGCTTGTGCGAACCAAACTAC
TCAGGTGGATTTTAACCGCTCGGAAGCCGTCAAAGCTCGCATTAATTTGGCCCTTGCTTACCTTGAACAATCTGATTTTC
CAAAAGCGAAAGAGAACATTGACAAAGCGCTTGAACACGATGTAAAAGACTACCTACCGCACTCTGTGCTTGCCTATTAT
TACCAACAAACTGGCGATAACCAAAAAGCAGAAGAAGCCTACCAGCAAGCCTTGAAGTTAAGTAAAACACAGAGCAAAAA
CAATCAAGTTCGCCCTGATGTATTGAATAACTACGGTACCTTTCTGTGCAAACAAAAACAGTTCGACAAAGCCTATCAGC
AATTTGAAACGGCATTAACCAGTCAAGAAGCCTATTACAATCAAGCAGATACACTAGAAAATATCGCCTTATGTGCCAAT
ATGAAGAAGGATATTGAGAAGCAAAAAACAGCACTATCTCAACTTGAGAAAATAGATAAATCAAGAGCAGAACGACTATA
TAATTTCATGGAGATTAGATAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Glaesserella parasuis strain SC1401 |
99.482 |
100 |
0.995 |
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
44.693 |
92.746 |
0.415 |