Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   JT17_RS03555 Genome accession   NZ_CP009237
Coordinates   735403..735924 (-) Length   173 a.a.
NCBI ID   WP_021112068.1    Uniprot ID   -
Organism   Glaesserella parasuis strain KL0318     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 730403..740924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JT17_RS03520 (JT17_03670) - 730645..731274 (-) 630 WP_010785950.1 LysE family transporter -
  JT17_RS03525 (JT17_03675) - 731276..731746 (-) 471 WP_005712497.1 phosphatidylglycerophosphatase A -
  JT17_RS03530 (JT17_03680) thiL 731749..732717 (-) 969 WP_021110497.1 thiamine-phosphate kinase -
  JT17_RS03535 (JT17_03685) nusB 732726..733139 (-) 414 WP_010785952.1 transcription antitermination factor NusB -
  JT17_RS03540 (JT17_03690) comE 733218..734480 (-) 1263 WP_005712502.1 type IV pilus secretin PilQ Machinery gene
  JT17_RS03545 (JT17_03695) comD 734490..734831 (-) 342 WP_232422217.1 hypothetical protein Machinery gene
  JT17_RS03550 (JT17_03700) comC 734876..735406 (-) 531 WP_021119496.1 hypothetical protein Machinery gene
  JT17_RS03555 (JT17_03705) comB 735403..735924 (-) 522 WP_021112068.1 hypothetical protein Machinery gene
  JT17_RS03560 (JT17_03710) comA 735900..736577 (-) 678 WP_021113429.1 hypothetical protein Machinery gene
  JT17_RS03565 (JT17_03715) - 736731..739286 (+) 2556 WP_044009119.1 penicillin-binding protein 1A -
  JT17_RS03570 (JT17_03720) aroK 739516..740037 (+) 522 WP_005712514.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 20310.97 Da        Isoelectric Point: 6.8725

>NTDB_id=127470 JT17_RS03555 WP_021112068.1 735403..735924(-) (comB) [Glaesserella parasuis strain KL0318]
MEWQGINLNGYRQQQWLKQSQKNLKHLTACLVVSTLLALLISWQNQQQQHQFHTLAQQRQQSQEQQTALSQQIEQLTLQS
QNKSTQSLENRQITAFLNYLLGIQLSGIIEIAQLYQAENTVFKLKGKVSSPTQFSELEQQLKAMNYIYQIEQFETREKSE
IEFSLHIDLKEKE

Nucleotide


Download         Length: 522 bp        

>NTDB_id=127470 JT17_RS03555 WP_021112068.1 735403..735924(-) (comB) [Glaesserella parasuis strain KL0318]
ATGGAATGGCAAGGCATCAATCTAAATGGCTACCGCCAACAGCAATGGTTGAAACAGTCGCAAAAAAACCTCAAGCATCT
CACCGCTTGTCTTGTGGTTAGCACACTACTGGCGTTACTTATCAGTTGGCAAAATCAACAGCAACAACATCAATTTCACA
CTTTGGCTCAACAGCGACAACAAAGCCAAGAGCAACAAACCGCATTAAGCCAGCAGATTGAACAACTGACTTTGCAATCA
CAAAATAAAAGCACACAAAGCCTAGAAAATAGGCAGATTACCGCATTTTTGAATTATCTGTTAGGCATTCAATTATCAGG
AATTATTGAGATAGCCCAACTATACCAAGCAGAAAATACCGTCTTTAAACTCAAAGGCAAAGTGTCTAGCCCTACTCAAT
TTAGCGAGCTTGAACAACAATTAAAAGCAATGAATTACATTTATCAAATAGAACAATTTGAAACGCGTGAAAAAAGCGAG
ATTGAATTTAGCCTACATATTGATTTAAAGGAAAAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Glaesserella parasuis strain SC1401

98.266

100

0.983

Multiple sequence alignment