Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | JT17_RS03545 | Genome accession | NZ_CP009237 |
| Coordinates | 734490..734831 (-) | Length | 113 a.a. |
| NCBI ID | WP_232422217.1 | Uniprot ID | - |
| Organism | Glaesserella parasuis strain KL0318 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 729490..739831
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JT17_RS03515 (JT17_03665) | trxA | 730034..730348 (-) | 315 | WP_005712493.1 | thioredoxin | - |
| JT17_RS03520 (JT17_03670) | - | 730645..731274 (-) | 630 | WP_010785950.1 | LysE family transporter | - |
| JT17_RS03525 (JT17_03675) | - | 731276..731746 (-) | 471 | WP_005712497.1 | phosphatidylglycerophosphatase A | - |
| JT17_RS03530 (JT17_03680) | thiL | 731749..732717 (-) | 969 | WP_021110497.1 | thiamine-phosphate kinase | - |
| JT17_RS03535 (JT17_03685) | nusB | 732726..733139 (-) | 414 | WP_010785952.1 | transcription antitermination factor NusB | - |
| JT17_RS03540 (JT17_03690) | comE | 733218..734480 (-) | 1263 | WP_005712502.1 | type IV pilus secretin PilQ | Machinery gene |
| JT17_RS03545 (JT17_03695) | comD | 734490..734831 (-) | 342 | WP_232422217.1 | hypothetical protein | Machinery gene |
| JT17_RS03550 (JT17_03700) | comC | 734876..735406 (-) | 531 | WP_021119496.1 | hypothetical protein | Machinery gene |
| JT17_RS03555 (JT17_03705) | comB | 735403..735924 (-) | 522 | WP_021112068.1 | hypothetical protein | Machinery gene |
| JT17_RS03560 (JT17_03710) | comA | 735900..736577 (-) | 678 | WP_021113429.1 | hypothetical protein | Machinery gene |
| JT17_RS03565 (JT17_03715) | - | 736731..739286 (+) | 2556 | WP_044009119.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 113 a.a. Molecular weight: 13163.88 Da Isoelectric Point: 4.8553
>NTDB_id=127468 JT17_RS03545 WP_232422217.1 734490..734831(-) (comD) [Glaesserella parasuis strain KL0318]
MADPFYAKDNAQDQPQTAKDQNKTTACTPTEKVNEIHLTTDFDKLQLIGIIQIDDKIRAIFIDDKKQLIDLYPNDYLSHS
FIQIKEIDFKSVSYIDWQKTENCQSPKLFTSKF
MADPFYAKDNAQDQPQTAKDQNKTTACTPTEKVNEIHLTTDFDKLQLIGIIQIDDKIRAIFIDDKKQLIDLYPNDYLSHS
FIQIKEIDFKSVSYIDWQKTENCQSPKLFTSKF
Nucleotide
Download Length: 342 bp
>NTDB_id=127468 JT17_RS03545 WP_232422217.1 734490..734831(-) (comD) [Glaesserella parasuis strain KL0318]
ATGGCAGATCCTTTTTATGCTAAGGATAACGCCCAAGATCAGCCACAAACGGCAAAAGATCAAAACAAAACGACCGCTTG
TACGCCAACAGAGAAGGTGAACGAAATTCACCTCACCACAGATTTTGATAAATTACAGCTTATCGGCATTATTCAGATCG
ACGATAAAATTCGAGCGATTTTTATAGATGATAAAAAACAGCTTATAGATTTATATCCTAACGACTATTTAAGCCATTCC
TTTATTCAAATTAAAGAGATTGATTTTAAATCTGTTAGTTATATTGATTGGCAAAAAACAGAAAATTGCCAATCTCCTAA
ATTGTTTACTTCAAAATTTTAG
ATGGCAGATCCTTTTTATGCTAAGGATAACGCCCAAGATCAGCCACAAACGGCAAAAGATCAAAACAAAACGACCGCTTG
TACGCCAACAGAGAAGGTGAACGAAATTCACCTCACCACAGATTTTGATAAATTACAGCTTATCGGCATTATTCAGATCG
ACGATAAAATTCGAGCGATTTTTATAGATGATAAAAAACAGCTTATAGATTTATATCCTAACGACTATTTAAGCCATTCC
TTTATTCAAATTAAAGAGATTGATTTTAAATCTGTTAGTTATATTGATTGGCAAAAAACAGAAAATTGCCAATCTCCTAA
ATTGTTTACTTCAAAATTTTAG
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Glaesserella parasuis strain SC1401 |
93.805 |
100 |
0.938 |