Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | TKV_RS12015 | Genome accession | NZ_CP009170 |
| Coordinates | 2378135..2378587 (-) | Length | 150 a.a. |
| NCBI ID | WP_049686128.1 | Uniprot ID | A0A097AUQ6 |
| Organism | Thermoanaerobacter kivui strain LKT-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2373135..2383587
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| TKV_RS11990 (TKV_c24550) | rplI | 2374125..2374568 (-) | 444 | WP_049686123.1 | 50S ribosomal protein L9 | - |
| TKV_RS11995 (TKV_c24560) | - | 2374565..2376532 (-) | 1968 | WP_049686124.1 | DHH family phosphoesterase | - |
| TKV_RS12000 (TKV_c24570) | - | 2376551..2377459 (-) | 909 | WP_049686125.1 | YybS family protein | - |
| TKV_RS12005 (TKV_c24580) | - | 2377464..2377772 (-) | 309 | WP_049686126.1 | MazG-like family protein | - |
| TKV_RS12010 (TKV_c24590) | rpsR | 2377853..2378119 (-) | 267 | WP_049686127.1 | 30S ribosomal protein S18 | - |
| TKV_RS12015 (TKV_c24600) | ssbA | 2378135..2378587 (-) | 453 | WP_049686128.1 | single-stranded DNA-binding protein | Machinery gene |
| TKV_RS12020 (TKV_c24610) | rpsF | 2378619..2378906 (-) | 288 | WP_049686129.1 | 30S ribosomal protein S6 | - |
| TKV_RS12025 (TKV_c24620) | - | 2378973..2379179 (-) | 207 | WP_049686130.1 | DUF951 domain-containing protein | - |
| TKV_RS12030 (TKV_c24630) | mscS | 2379259..2380110 (-) | 852 | WP_049686131.1 | small-conductance mechanosensitive channel MscS | - |
| TKV_RS12035 (TKV_c24640) | yyaC | 2380263..2380820 (+) | 558 | WP_049686132.1 | spore protease YyaC | - |
Sequence
Protein
Download Length: 150 a.a. Molecular weight: 16935.92 Da Isoelectric Point: 4.3472
>NTDB_id=127251 TKV_RS12015 WP_049686128.1 2378135..2378587(-) (ssbA) [Thermoanaerobacter kivui strain LKT-1]
MLNKVILIGRLTKDPVMRYSANMVPVTTFTLAVNRNYVSQSGERPTDFIPIVTWRKLAEICANNLKKGRLIAVTGSIQTR
SWDDNSGNRHWVTEVVADDVRFLEPKSGFGSSGNAEENRDFDEGFDSVFEDIPEEFEGFTPIESEDDLPF
MLNKVILIGRLTKDPVMRYSANMVPVTTFTLAVNRNYVSQSGERPTDFIPIVTWRKLAEICANNLKKGRLIAVTGSIQTR
SWDDNSGNRHWVTEVVADDVRFLEPKSGFGSSGNAEENRDFDEGFDSVFEDIPEEFEGFTPIESEDDLPF
Nucleotide
Download Length: 453 bp
>NTDB_id=127251 TKV_RS12015 WP_049686128.1 2378135..2378587(-) (ssbA) [Thermoanaerobacter kivui strain LKT-1]
ATGTTAAATAAGGTTATTTTAATAGGCCGGCTTACAAAAGACCCTGTAATGAGGTATAGTGCCAATATGGTTCCTGTTAC
TACTTTTACGTTAGCGGTTAACAGGAATTATGTCAGTCAGAGCGGGGAAAGGCCTACTGATTTTATACCCATCGTCACAT
GGAGAAAGCTTGCAGAGATCTGCGCTAATAACTTAAAAAAGGGTAGACTAATAGCAGTGACGGGAAGCATTCAAACCCGT
TCATGGGATGATAATAGCGGCAATCGGCATTGGGTTACAGAAGTGGTAGCAGACGATGTGAGATTTTTAGAGCCGAAATC
TGGTTTTGGCAGCAGTGGCAATGCTGAAGAAAATAGAGATTTTGATGAAGGCTTTGACAGTGTATTTGAAGATATACCGG
AAGAGTTTGAGGGCTTTACACCTATAGAGAGTGAAGATGATTTACCTTTTTAA
ATGTTAAATAAGGTTATTTTAATAGGCCGGCTTACAAAAGACCCTGTAATGAGGTATAGTGCCAATATGGTTCCTGTTAC
TACTTTTACGTTAGCGGTTAACAGGAATTATGTCAGTCAGAGCGGGGAAAGGCCTACTGATTTTATACCCATCGTCACAT
GGAGAAAGCTTGCAGAGATCTGCGCTAATAACTTAAAAAAGGGTAGACTAATAGCAGTGACGGGAAGCATTCAAACCCGT
TCATGGGATGATAATAGCGGCAATCGGCATTGGGTTACAGAAGTGGTAGCAGACGATGTGAGATTTTTAGAGCCGAAATC
TGGTTTTGGCAGCAGTGGCAATGCTGAAGAAAATAGAGATTTTGATGAAGGCTTTGACAGTGTATTTGAAGATATACCGG
AAGAGTTTGAGGGCTTTACACCTATAGAGAGTGAAGATGATTTACCTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
46.286 |
100 |
0.54 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
44 |
83.333 |
0.367 |