Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ID12_RS16220 Genome accession   NZ_CP009108
Coordinates   3214729..3215499 (-) Length   256 a.a.
NCBI ID   WP_007501304.1    Uniprot ID   -
Organism   Bacillus altitudinis strain GR-8     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3209729..3220499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID12_RS16200 (ID12_16860) - 3209822..3210643 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  ID12_RS16205 (ID12_16865) - 3210669..3211307 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  ID12_RS16210 (ID12_16870) glyS 3211474..3213519 (-) 2046 WP_050827418.1 glycine--tRNA ligase subunit beta -
  ID12_RS16215 (ID12_16875) glyQ 3213512..3214399 (-) 888 WP_050827420.1 glycine--tRNA ligase subunit alpha -
  ID12_RS16220 (ID12_16880) recO 3214729..3215499 (-) 771 WP_007501304.1 DNA repair protein RecO Machinery gene
  ID12_RS19155 - 3215535..3215678 (-) 144 WP_008342408.1 YqzL family protein -
  ID12_RS16225 (ID12_16890) era 3215826..3216731 (-) 906 WP_007501305.1 GTPase Era -
  ID12_RS16230 (ID12_16895) - 3216724..3217122 (-) 399 WP_008342410.1 cytidine deaminase -
  ID12_RS16235 (ID12_16900) - 3217235..3217621 (-) 387 WP_008342413.1 diacylglycerol kinase family protein -
  ID12_RS16240 (ID12_16905) ybeY 3217599..3218078 (-) 480 WP_007501310.1 rRNA maturation RNase YbeY -
  ID12_RS16245 (ID12_16910) - 3218079..3220193 (-) 2115 WP_419761248.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29345.04 Da        Isoelectric Point: 8.4348

>NTDB_id=126883 ID12_RS16220 WP_007501304.1 3214729..3215499(-) (recO) [Bacillus altitudinis strain GR-8]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMMESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGLKPELDQCVHCGQKEG
QFHFSIRDNGFICRQCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMDGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=126883 ID12_RS16220 WP_007501304.1 3214729..3215499(-) (recO) [Bacillus altitudinis strain GR-8]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGCGCTAAGAAATCGAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGTGAAATGATGGAAAGCATGCGAACC
ATTCGGGAAGATTTATTTCTGACTGCATATGCCGCATATATGACAGAATTACTTGATAAAGGAACAGAAGAAAAGAAGCC
AAACCCTTACTTGTTTGAACTTCTTCTTCAATCTTTACGCCATCTCAATGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTTAAAATGCTGTCAGTGATGGGGTTGAAGCCTGAACTGGACCAATGTGTACACTGCGGTCAAAAAGAAGGG
CAGTTCCATTTCTCAATTAGAGATAACGGATTCATCTGTAGGCAATGCTTTTCTAAAGATCCATATAAACTGCCCTTATC
CCCAGCAGCAGCAAGACTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGACGTGAAACCACAGA
CGAAACAAGAAATTCGTCAAGTGCTCGATCATTATTATGAAGAGTATTCAGGTCTTTATTTAAAATCAAAAAAATTCATG
AATCAAATGGAATCCATGAAAAAGCTAATGGACGGCGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.781

100

0.758

Multiple sequence alignment