Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   WV34_RS15955 Genome accession   NZ_CP011252
Coordinates   3131836..3132468 (-) Length   210 a.a.
NCBI ID   WP_003151798.1    Uniprot ID   A0A9P1NJB3
Organism   Bacillus amyloliquefaciens strain MT45     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3126836..3137468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WV34_RS15935 (WV34_15540) - 3127863..3128048 (-) 186 WP_003151806.1 YvzF family protein -
  WV34_RS15940 (WV34_15545) - 3128165..3129609 (+) 1445 Protein_3066 spore germination protein -
  WV34_RS15945 (WV34_15550) - 3129584..3130684 (+) 1101 WP_088613427.1 spore germination protein -
  WV34_RS15950 (WV34_15555) - 3130681..3131793 (+) 1113 WP_088613428.1 Ger(x)C family spore germination protein -
  WV34_RS15955 (WV34_15560) vraR 3131836..3132468 (-) 633 WP_003151798.1 response regulator transcription factor Regulator
  WV34_RS15960 (WV34_15565) liaS 3132446..3133528 (-) 1083 WP_003151796.1 two-component system sensor histidine kinase LiaS -
  WV34_RS15965 (WV34_15570) liaF 3133525..3134256 (-) 732 WP_013353564.1 cell wall-active antibiotics response protein LiaF -
  WV34_RS15970 (WV34_15575) - 3134285..3135154 (-) 870 WP_088613429.1 DUF4097 domain-containing protein -
  WV34_RS15975 (WV34_15580) - 3135260..3135937 (-) 678 WP_088613430.1 PspA/IM30 family protein -
  WV34_RS15980 (WV34_15585) - 3135951..3136331 (-) 381 WP_088613431.1 protein liaI -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22991.65 Da        Isoelectric Point: 4.8837

>NTDB_id=126847 WV34_RS15955 WP_003151798.1 3131836..3132468(-) (vraR) [Bacillus amyloliquefaciens strain MT45]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVAGEASDGQQGVDLAAELLPDVILMDLVMDGMDGIEATKQICAKLNDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIAEAIRAAAKGEPKLESKVAGKVLSRLRHSENQLPHETLTKRELEILCLV
AEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVT

Nucleotide


Download         Length: 633 bp        

>NTDB_id=126847 WV34_RS15955 WP_003151798.1 3131836..3132468(-) (vraR) [Bacillus amyloliquefaciens strain MT45]
GTGATTCGAGTGTTACTGATTGATGATCACGAAATGGTCAGGATGGGCCTGGCCGCATTTTTAGAAGCACAGCCGGACAT
TGAAGTCGCCGGTGAAGCGTCAGACGGACAGCAGGGCGTCGATCTGGCCGCAGAGCTTTTGCCGGATGTCATTTTAATGG
ATCTTGTCATGGACGGCATGGACGGCATCGAAGCGACAAAACAGATCTGCGCGAAACTCAATGATCCGAAAATCATCGTG
CTGACAAGCTTTATTGATGACGACAAAGTGTATCCGGTGATCGAAGCGGGGGCGCTCAGCTATTTGCTGAAAACATCCAA
AGCGGCAGAAATAGCCGAAGCCATCAGAGCGGCTGCCAAGGGCGAACCGAAGCTTGAATCGAAGGTGGCGGGAAAAGTGC
TGTCAAGGCTGCGCCATTCAGAGAATCAGCTTCCGCATGAAACACTGACAAAAAGAGAACTGGAAATCCTCTGTCTCGTC
GCGGAAGGCAAGACGAACAAAGAGATTGGAGAAGAGCTGTTCATAACGATTAAAACGGTGAAAACCCACATCACGAATAT
ATTGTCAAAGCTTGATGTCAGTGACCGCACGCAGGCAGCCGTATATGCCCACCGCAATCATCTCGTGACATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1NJB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

50.481

99.048

0.5
  degU Bacillus subtilis subsp. subtilis str. 168

36.771

100

0.39

Multiple sequence alignment