Detailed information NTG0126832

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: WV34_RS13305
• Genome accession: NZ_CP011252
• Coordinates: 2633390..2634652 (-)
• Length: 420 a.a.
• NCBI ID: WP_014470784.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain MT45
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2628390..2639652

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WV34_RS13290 (WV34_12945)	yihA	2628474..2629061 (-)	588	WP_013353078.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
WV34_RS13295 (WV34_12950)	lon	2629058..2631382 (-)	2325	WP_088613214.1	endopeptidase La	-
WV34_RS13300 (WV34_12955)	lonB	2631581..2633239 (-)	1659	WP_088613215.1	ATP-dependent protease LonB	-
WV34_RS13305 (WV34_12960)	clpX	2633390..2634652 (-)	1263	WP_014470784.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
WV34_RS13310 (WV34_12965)	tig	2634924..2636198 (-)	1275	WP_071347931.1	trigger factor	-
WV34_RS13315 (WV34_12970)	ddcA	2636415..2637419 (-)	1005	WP_013353083.1	DNA damage checkpoint antagonist DdcA	-
WV34_RS13320 (WV34_12975)	leuD	2637537..2638136 (-)	600	WP_088613216.1	3-isopropylmalate dehydratase small subunit	-
WV34_RS13325 (WV34_12980)	leuC	2638151..2639569 (-)	1419	WP_088613217.1	3-isopropylmalate dehydratase large subunit	-

Sequence

Protein

• Length: 420 a.a.
• Molecular weight: 46261.03 Da
• Isoelectric Point: 4.4885

>NTDB_id=126832 WV34_RS13305 WP_014470784.1 2633390..2634652(-) (clpX) [Bacillus amyloliquefaciens strain MT45]
MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKDVPKPQEIREILNEYVIGQDQ
AKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILL
KLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI
LFICGGAFDGIEQIIKRRLGQKVIGFGSDNKVADLEKEELLSKVLPEDLLRFGLIPEFIGRLPVIASLEQLDETALVEIL
TKPKNALVKQYKKMLELDDVELDFEDEALSEIAKKAIERKTGARGLRSIIEGIMLDVMFDLPSRDDIEKCVITGATVADG
EAPRLVLKDGTVVGQDKTSA

Nucleotide

• Length: 1263 bp

>NTDB_id=126832 WV34_RS13305 WP_014470784.1 2633390..2634652(-) (clpX) [Bacillus amyloliquefaciens strain MT45]
ATGTTTAAATTCAACGAGGAAAAAGGACAATTAAAATGCTCGTTCTGCGGAAAAACGCAAGATCAGGTTCGTAAGCTGGT
TGCAGGACCGGGTGTATATATATGCGACGAATGCATCGAGCTCTGTACAGAAATCGTAGAGGAAGAGCTGGGCACAGAAG
AAGAAGTCGAATTTAAAGACGTTCCGAAGCCGCAGGAAATCCGTGAGATTCTGAATGAATATGTCATCGGACAGGATCAG
GCGAAGAAATCACTTGCGGTTGCGGTATACAACCATTACAAACGCATCAACTCCAACAGTAAAGTGGATGATGTCGAGCT
TTCTAAAAGTAATATTTCATTAATCGGGCCGACTGGAAGCGGGAAAACACTTCTTGCCCAGACACTTGCGCGTATTCTGA
ACGTGCCGTTTGCGATCGCGGACGCTACATCTCTGACTGAAGCCGGATATGTCGGTGAGGACGTAGAAAACATTCTCCTC
AAACTGATTCAGGCAGCAGACTATGATGTGGAAAAAGCGGAAAAAGGCATTATTTATATCGATGAAATCGATAAAGTAGC
GCGTAAATCAGAAAACCCGTCCATCACACGTGACGTATCAGGCGAAGGCGTTCAGCAGGCGCTGCTGAAAATTCTTGAAG
GAACGGTTGCAAGCGTGCCGCCTCAAGGAGGGCGCAAACATCCTCATCAGGAATTCATTCAGATCGATACGACGAACATT
CTGTTCATTTGCGGCGGCGCATTTGACGGCATCGAACAAATCATTAAACGCCGTCTCGGACAAAAAGTCATCGGCTTCGG
CTCTGATAATAAAGTGGCAGACTTGGAAAAAGAAGAACTGCTTTCTAAAGTTCTTCCGGAAGACTTGCTTCGTTTCGGGC
TGATTCCTGAATTCATCGGCCGTCTTCCTGTCATTGCAAGCCTTGAGCAGCTTGACGAAACGGCACTGGTTGAAATTCTG
ACTAAACCTAAAAACGCACTCGTCAAACAATACAAGAAAATGTTAGAACTAGATGATGTCGAGCTTGATTTTGAAGACGA
GGCATTATCTGAAATTGCGAAAAAAGCGATCGAGCGAAAAACAGGCGCACGCGGCCTGCGTTCTATCATTGAGGGCATCA
TGCTTGACGTCATGTTTGATCTGCCGTCCCGCGATGACATTGAAAAATGTGTCATTACCGGAGCGACAGTGGCAGACGGT
GAAGCACCGCGTCTTGTATTAAAAGACGGCACTGTTGTCGGTCAAGATAAAACATCAGCGTAA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (109-305)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (311-389)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	68.01	94.524	0.643
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	59.158	96.19	0.569