Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   WV34_RS08215 Genome accession   NZ_CP011252
Coordinates   1588222..1589244 (+) Length   340 a.a.
NCBI ID   WP_088612772.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MT45     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1583222..1594244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WV34_RS08180 (WV34_07980) - 1583584..1583823 (+) 240 WP_003154475.1 YlbE-like family protein -
  WV34_RS08185 (WV34_07985) ylbF 1583895..1584344 (+) 450 WP_013352152.1 YlbF family regulator Regulator
  WV34_RS08190 (WV34_07990) - 1584403..1584675 (+) 273 WP_013352153.1 YlbG family protein -
  WV34_RS08195 (WV34_07995) rsmD 1584974..1585528 (+) 555 WP_007409693.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  WV34_RS08200 (WV34_08000) coaD 1585533..1586015 (+) 483 WP_013352154.1 pantetheine-phosphate adenylyltransferase -
  WV34_RS08205 (WV34_08005) ylbJ 1586033..1587259 (-) 1227 WP_071346863.1 sporulation integral membrane protein YlbJ -
  WV34_RS08210 (WV34_08010) - 1587437..1588216 (+) 780 WP_013352156.1 patatin-like phospholipase family protein -
  WV34_RS08215 (WV34_08015) sepM 1588222..1589244 (+) 1023 WP_088612772.1 SepM family pheromone-processing serine protease Regulator
  WV34_RS08220 (WV34_08020) - 1589266..1590513 (-) 1248 WP_088612773.1 nucleotidyltransferase -
  WV34_RS08225 (WV34_08025) - 1590721..1591239 (+) 519 WP_013352159.1 DUF177 domain-containing protein -
  WV34_RS08230 rpmF 1591261..1591440 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  WV34_RS08235 (WV34_08030) gerR 1591597..1592172 (+) 576 WP_088612774.1 sporulation-specific transcriptional regulator GerR -
  WV34_RS08240 (WV34_08035) - 1592213..1592695 (-) 483 WP_071346860.1 N-acetyltransferase -
  WV34_RS08245 (WV34_08040) - 1592858..1593739 (+) 882 WP_235608421.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37453.20 Da        Isoelectric Point: 9.5435

>NTDB_id=126784 WV34_RS08215 WP_088612772.1 1588222..1589244(+) (sepM) [Bacillus amyloliquefaciens strain MT45]
MKAKHFRWVFIILILLIAITFIKLPYYITQPGEASELRPLIKVDGGYPEKGSLSLMTVKVGPANPYTYLWAKVHPYDEIV
PDESIKEEGETDSDYMKRQLQMMKSSQENAVIAAYQKAGKQVKYSFSGIYASSVVSNMPAKGKIKVGDKIISADGKKYES
AEKLIDYISSKKAGEKVTFNIERDTKEKTVTLKLKSFPDDPKRAGIGVALYTDRNVKVKPDLHFSIENIGGPSAGLMMSL
EIYNQLTKPDETKGYNIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGAENSDYKNAVKTAKAIKSDMKIV
PVDTMQDALDYLDKLKVKST

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=126784 WV34_RS08215 WP_088612772.1 1588222..1589244(+) (sepM) [Bacillus amyloliquefaciens strain MT45]
ATGAAAGCAAAACATTTTCGCTGGGTGTTTATCATCCTGATCTTATTAATCGCTATTACATTTATTAAGCTTCCGTATTA
CATCACACAGCCGGGAGAAGCATCAGAGCTGAGACCGCTGATTAAGGTGGACGGAGGCTATCCTGAAAAAGGAAGCCTTT
CCTTGATGACTGTCAAAGTAGGCCCCGCCAATCCGTATACATATCTTTGGGCGAAGGTGCATCCTTACGATGAAATCGTC
CCTGATGAAAGCATAAAAGAAGAGGGCGAAACTGATTCAGACTACATGAAACGCCAGCTGCAGATGATGAAAAGCTCTCA
AGAAAACGCGGTCATTGCCGCTTATCAAAAAGCCGGCAAACAGGTAAAATACTCATTTAGCGGCATTTACGCCAGCTCAG
TCGTCTCCAATATGCCGGCAAAAGGAAAAATAAAGGTCGGTGATAAAATCATCAGCGCGGACGGGAAAAAATATGAATCC
GCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGGGAAAAAGTAACGTTTAACATTGAACGTGACACGAAAGA
AAAGACCGTTACCCTTAAGCTGAAATCATTCCCGGACGACCCGAAAAGAGCCGGAATCGGCGTAGCGTTATATACGGACC
GGAACGTGAAAGTGAAGCCGGATCTTCATTTCAGCATTGAAAACATCGGCGGGCCTTCTGCCGGTCTCATGATGTCCTTG
GAAATTTACAATCAGCTGACAAAACCTGACGAAACAAAAGGCTACAATATAGCCGGAACGGGAACAATCGACGTTGACGG
CAAGGTCGGACCGATCGGCGGAATCGATCAGAAAGTCGTTGCCGCAGACAAAGCGGGAAAAGATATTTTCTTTGCACCGA
ACCAAAACGGAGCTGAAAACTCTGATTATAAAAATGCAGTAAAAACGGCGAAAGCGATTAAGTCCGATATGAAAATCGTT
CCTGTCGATACGATGCAGGACGCGCTGGATTATTTGGATAAGCTGAAAGTAAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(230-330)

Peptidase family M50 (Peptidase_M50)

(102-218)

PDZ domain (PDZ_2)

(127-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

38.728

100

0.394