Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   WV34_RS08185 Genome accession   NZ_CP011252
Coordinates   1583895..1584344 (+) Length   149 a.a.
NCBI ID   WP_013352152.1    Uniprot ID   A0A9P1NHL6
Organism   Bacillus amyloliquefaciens strain MT45     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1578895..1589344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WV34_RS08145 (WV34_07945) ctaE 1579016..1579639 (+) 624 WP_013352146.1 cytochrome c oxidase subunit III -
  WV34_RS08150 (WV34_07950) ctaF 1579642..1579974 (+) 333 WP_007409686.1 cytochrome c oxidase subunit IVB -
  WV34_RS08155 (WV34_07955) ctaG 1579999..1580883 (+) 885 WP_088612768.1 cytochrome c oxidase assembly factor CtaG -
  WV34_RS08160 (WV34_07960) - 1580917..1581276 (-) 360 WP_065521350.1 YugN family protein -
  WV34_RS08165 (WV34_07965) - 1581417..1581860 (+) 444 WP_088612769.1 CBS domain-containing protein -
  WV34_RS08170 (WV34_07970) - 1581945..1582985 (+) 1041 WP_088612770.1 CAP domain-containing protein -
  WV34_RS08175 (WV34_07975) - 1583158..1583568 (+) 411 WP_088612771.1 YlbD family protein -
  WV34_RS08180 (WV34_07980) - 1583584..1583823 (+) 240 WP_003154475.1 YlbE-like family protein -
  WV34_RS08185 (WV34_07985) ylbF 1583895..1584344 (+) 450 WP_013352152.1 YlbF family regulator Regulator
  WV34_RS08190 (WV34_07990) - 1584403..1584675 (+) 273 WP_013352153.1 YlbG family protein -
  WV34_RS08195 (WV34_07995) rsmD 1584974..1585528 (+) 555 WP_007409693.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  WV34_RS08200 (WV34_08000) coaD 1585533..1586015 (+) 483 WP_013352154.1 pantetheine-phosphate adenylyltransferase -
  WV34_RS08205 (WV34_08005) ylbJ 1586033..1587259 (-) 1227 WP_071346863.1 sporulation integral membrane protein YlbJ -
  WV34_RS08210 (WV34_08010) - 1587437..1588216 (+) 780 WP_013352156.1 patatin-like phospholipase family protein -
  WV34_RS08215 (WV34_08015) sepM 1588222..1589244 (+) 1023 WP_088612772.1 SepM family pheromone-processing serine protease Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16885.96 Da        Isoelectric Point: 4.9442

>NTDB_id=126783 WV34_RS08185 WP_013352152.1 1583895..1584344(+) (ylbF) [Bacillus amyloliquefaciens strain MT45]
MYATVESVRLQSEAEQLAGMILQSETAENYRDCYKRLHEDEEARRIIRSFMSIKEQYEDVQRFGKYHPDYREISRKMREM
KRELDLNDKVAEFKKAETELQSLLDEISIELGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGGCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=126783 WV34_RS08185 WP_013352152.1 1583895..1584344(+) (ylbF) [Bacillus amyloliquefaciens strain MT45]
ATGTATGCAACAGTTGAGTCCGTCAGGCTTCAAAGTGAAGCGGAGCAGCTTGCCGGCATGATTCTGCAGTCTGAGACGGC
TGAAAATTACCGCGATTGTTACAAGCGTCTCCATGAAGATGAAGAGGCACGGCGGATTATTCGTTCTTTTATGAGCATTA
AAGAGCAGTATGAGGATGTGCAGCGCTTTGGCAAATATCATCCTGACTATAGAGAGATTTCCCGCAAAATGAGAGAAATG
AAGCGGGAGCTGGATTTAAATGATAAGGTGGCCGAATTTAAAAAAGCGGAGACTGAGCTTCAGTCGCTGCTTGACGAGAT
CAGCATTGAACTCGGAACGGCCGTCTCGGAGCATGTAAAAGTTCCGACGGGGAATCCTTATTTTGACGGCCTGTCATCCT
GCGGCGGCGGCTGCGGTTCCGGCGGCGGGTGCGGATGCAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1NHL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

88.591

100

0.886

Multiple sequence alignment