Detailed information NTG0126682

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: SMQ301_RS09720
• Genome accession: NZ_CP011217
• Coordinates: 1848206..1849306 (+)
• Length: 366 a.a.
• NCBI ID: WP_002947786.1
• Uniprot ID: Q5LXI7
• Organism: Streptococcus thermophilus strain SMQ-301
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1843206..1854306

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SMQ301_RS09695 (SMQ301_2024)	pgsA	1843748..1844290 (-)	543	WP_011681759.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
SMQ301_RS09700 (SMQ301_2025)	-	1844303..1845160 (-)	858	WP_011681760.1	helix-turn-helix domain-containing protein	-
SMQ301_RS09705 (SMQ301_2026)	yfmH	1845219..1846496 (-)	1278	WP_011681761.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
SMQ301_RS09710 (SMQ301_2027)	yfmF	1846498..1847748 (-)	1251	WP_011681762.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
SMQ301_RS09715 (SMQ301_2028)	yaaA	1847826..1848203 (+)	378	WP_002947785.1	S4 domain-containing protein YaaA	-
SMQ301_RS09720 (SMQ301_2029)	recF	1848206..1849306 (+)	1101	WP_002947786.1	DNA replication/repair protein RecF	Machinery gene
SMQ301_RS09725 (SMQ301_2030)	guaB	1849475..1850956 (-)	1482	WP_011227627.1	IMP dehydrogenase	-
SMQ301_RS09730 (SMQ301_2031)	trpS	1851133..1852155 (-)	1023	WP_011681763.1	tryptophan--tRNA ligase	-
SMQ301_RS09735 (SMQ301_2032)	-	1852583..1853455 (+)	873	WP_011681764.1	YitT family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 42173.29 Da
• Isoelectric Point: 8.3913

>NTDB_id=126682 SMQ301_RS09720 WP_002947786.1 1848206..1849306(+) (recF) [Streptococcus thermophilus strain SMQ-301]
MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide

• Length: 1101 bp

>NTDB_id=126682 SMQ301_RS09720 WP_002947786.1 1848206..1849306(+) (recF) [Streptococcus thermophilus strain SMQ-301]
ATGTGGCTTGAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCATCGTCATAGTGGAAAC
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTAATTAAAAAAGTGACAGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACGACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q5LXI7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.642	97.814	0.642
recF	Bacillus subtilis subsp. subtilis str. 168	42.935	100	0.432