Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   SMQ301_RS06815 Genome accession   NZ_CP011217
Coordinates   1302572..1303216 (-) Length   214 a.a.
NCBI ID   WP_002951384.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain SMQ-301     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1297572..1308216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMQ301_RS06790 (SMQ301_1405) - 1299673..1300671 (-) 999 WP_011226284.1 NAD(P)/FAD-dependent oxidoreductase -
  SMQ301_RS06795 (SMQ301_1406) trmD 1300673..1301392 (-) 720 WP_011226285.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  SMQ301_RS06800 (SMQ301_1407) rimM 1301382..1301900 (-) 519 WP_011681402.1 ribosome maturation factor RimM -
  SMQ301_RS06815 (SMQ301_1408) vraR 1302572..1303216 (-) 645 WP_002951384.1 response regulator transcription factor Regulator
  SMQ301_RS06820 (SMQ301_1409) - 1303206..1304216 (-) 1011 WP_011226288.1 sensor histidine kinase -
  SMQ301_RS06825 (SMQ301_1410) liaF 1304213..1304911 (-) 699 WP_011226289.1 cell wall-active antibiotics response protein LiaF -
  SMQ301_RS12540 (SMQ301_1411) - 1305166..1305333 (-) 168 WP_014608530.1 potassium channel family protein -
  SMQ301_RS06830 (SMQ301_1413) stkP/pknB 1305970..1307841 (-) 1872 WP_046206487.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24048.39 Da        Isoelectric Point: 4.5864

>NTDB_id=126639 SMQ301_RS06815 WP_002951384.1 1302572..1303216(-) (vraR) [Streptococcus thermophilus strain SMQ-301]
MSNKINVILVDDHEMVRLGLKSFLNLQGDVEVVGEAENGREGVDLALELRPDVVVMDLVMPELDGVQATLELLKEWPEAK
ILVLTSYLDNEKIYPVIEAGAKGYMLKTSSAAEILNSIRKVYRGEEAIETEVDNKIKYHDSHPNLHDDLTARERDILALL
AKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLVSQDDE

Nucleotide


Download         Length: 645 bp        

>NTDB_id=126639 SMQ301_RS06815 WP_002951384.1 1302572..1303216(-) (vraR) [Streptococcus thermophilus strain SMQ-301]
ATGTCGAATAAGATTAATGTAATTTTGGTAGATGATCATGAAATGGTTCGTTTAGGCCTTAAGAGTTTCTTGAATCTCCA
AGGAGATGTAGAAGTGGTTGGAGAGGCAGAAAACGGCCGTGAGGGTGTCGATCTTGCCCTGGAGCTACGACCAGATGTCG
TTGTTATGGACCTTGTTATGCCTGAGCTAGATGGTGTTCAGGCGACTTTGGAATTGCTAAAAGAATGGCCTGAAGCTAAG
ATTCTAGTTTTGACCAGCTATTTGGACAATGAAAAAATTTATCCAGTCATTGAAGCTGGCGCCAAAGGCTATATGCTTAA
AACGAGCAGTGCAGCAGAGATTCTAAATAGTATCCGTAAGGTTTACCGTGGAGAGGAAGCTATCGAAACTGAGGTAGACA
ATAAGATTAAATACCATGATAGTCACCCGAACTTACATGATGACTTGACCGCGCGCGAACGTGATATCTTAGCCCTCCTA
GCTAAAGGCTATGACAATCAAACCATTGCTAACGAACTTTTTATTTCTTTAAAAACCGTCAAGACTCATGTGTCTAATAT
CCTTGGGAAATTAAATGTTGATGACCGTACTCAGGCTGTAGTTTATGCCTTTAGACATCATCTGGTTTCACAGGATGATG
AATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-118)

Bacterial regulatory proteins, luxR family (GerE)

(149-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

50.485

96.262

0.486
  degU Bacillus subtilis subsp. subtilis str. 168

36.161

100

0.379

Multiple sequence alignment