Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | NCDO2118_RS11990 | Genome accession | NZ_CP009054 |
| Coordinates | 2454222..2454722 (-) | Length | 166 a.a. |
| NCBI ID | WP_003131953.1 | Uniprot ID | - |
| Organism | Lactococcus lactis subsp. lactis NCDO 2118 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2449222..2459722
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NCDO2118_RS11965 (NCDO2118_2288) | gnd | 2450465..2451370 (-) | 906 | WP_038603774.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| NCDO2118_RS11970 (NCDO2118_2289) | - | 2451563..2452411 (+) | 849 | WP_012898662.1 | MurR/RpiR family transcriptional regulator | - |
| NCDO2118_RS11975 (NCDO2118_2290) | - | 2452449..2452757 (+) | 309 | WP_010906371.1 | DUF960 domain-containing protein | - |
| NCDO2118_RS11980 (NCDO2118_2291) | - | 2452830..2453603 (-) | 774 | WP_012898663.1 | metallophosphoesterase | - |
| NCDO2118_RS11985 (NCDO2118_2292) | rpsR | 2453803..2454048 (-) | 246 | WP_003131952.1 | 30S ribosomal protein S18 | - |
| NCDO2118_RS11990 (NCDO2118_2293) | ssb | 2454222..2454722 (-) | 501 | WP_003131953.1 | single-stranded DNA-binding protein | Machinery gene |
| NCDO2118_RS11995 (NCDO2118_2294) | rpsF | 2454752..2455045 (-) | 294 | WP_003131954.1 | 30S ribosomal protein S6 | - |
| NCDO2118_RS12000 (NCDO2118_2295) | - | 2455237..2456091 (-) | 855 | WP_012898664.1 | undecaprenyl-diphosphate phosphatase | - |
| NCDO2118_RS12005 (NCDO2118_2296) | - | 2456614..2458080 (+) | 1467 | WP_017865200.1 | amino acid permease | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18304.13 Da Isoelectric Point: 5.2279
>NTDB_id=126459 NCDO2118_RS11990 WP_003131953.1 2454222..2454722(-) (ssb) [Lactococcus lactis subsp. lactis NCDO 2118]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=126459 NCDO2118_RS11990 WP_003131953.1 2454222..2454722(-) (ssb) [Lactococcus lactis subsp. lactis NCDO 2118]
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCGCCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCGCCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.465 |
100 |
0.627 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.803 |
100 |
0.602 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.855 |
0.373 |
| ssb | Glaesserella parasuis strain SC1401 |
35.028 |
100 |
0.373 |