Detailed information    

insolico Bioinformatically predicted

Overview

Name   mecA   Type   Regulator
Locus tag   NCDO2118_RS09855 Genome accession   NZ_CP009054
Coordinates   2038571..2039272 (-) Length   233 a.a.
NCBI ID   WP_004255173.1    Uniprot ID   S6FFV7
Organism   Lactococcus lactis subsp. lactis NCDO 2118     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 2033571..2044272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCDO2118_RS09835 (NCDO2118_1897) - 2033681..2034898 (-) 1218 WP_038603699.1 cysteine desulfurase -
  NCDO2118_RS09840 (NCDO2118_1898) sufD 2034898..2036154 (-) 1257 WP_012898358.1 Fe-S cluster assembly protein SufD -
  NCDO2118_RS09845 (NCDO2118_1899) sufC 2036292..2037062 (-) 771 WP_004255181.1 Fe-S cluster assembly ATPase SufC -
  NCDO2118_RS09850 (NCDO2118_1900) - 2037237..2038568 (-) 1332 WP_012898359.1 glycosyltransferase family 4 protein -
  NCDO2118_RS09855 (NCDO2118_1901) mecA 2038571..2039272 (-) 702 WP_004255173.1 adaptor protein MecA Regulator
  NCDO2118_RS09860 (NCDO2118_1902) - 2039402..2040136 (-) 735 WP_004255171.1 amino acid ABC transporter ATP-binding protein -
  NCDO2118_RS09865 (NCDO2118_1903) - 2040136..2040820 (-) 685 Protein_1959 amino acid ABC transporter permease -
  NCDO2118_RS09870 (NCDO2118_1904) - 2040968..2041876 (-) 909 WP_003130548.1 diacylglycerol/lipid kinase family protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 27077.46 Da        Isoelectric Point: 4.1246

>NTDB_id=126440 NCDO2118_RS09855 WP_004255173.1 2038571..2039272(-) (mecA) [Lactococcus lactis subsp. lactis NCDO 2118]
MKYEDINENTIKITLSFDDLTDYDIKLSDFFGNQEVIEQFFYELVDELGLENRFGNVGMLTFQIQPFPQGVHMIVHEEAM
LGEGGEIPDDPEEFEELMTGFYNKLNEIGADMARERGITDFKPGLGLPGTKKDEAEQEPDFIYYSIRYEDIMSVLTGIKN
VKFADEESEFYRYDGNFYLVVLDNQKEKGKMHVESTRSRMMEYGEATKMSREFLQEYGECLIATRALDVLRKI

Nucleotide


Download         Length: 702 bp        

>NTDB_id=126440 NCDO2118_RS09855 WP_004255173.1 2038571..2039272(-) (mecA) [Lactococcus lactis subsp. lactis NCDO 2118]
ATGAAATATGAGGATATAAACGAAAATACTATAAAAATCACCTTGTCTTTTGATGATTTGACAGATTATGATATCAAATT
ATCAGACTTTTTCGGAAATCAAGAAGTCATTGAACAATTTTTCTATGAATTGGTTGATGAGCTTGGTTTAGAAAATCGCT
TTGGAAATGTGGGAATGTTAACTTTCCAAATCCAACCTTTTCCTCAAGGTGTTCATATGATTGTTCATGAAGAAGCGATG
CTAGGTGAAGGTGGAGAAATTCCAGATGACCCAGAAGAGTTTGAAGAATTGATGACTGGTTTTTATAATAAATTAAATGA
AATAGGGGCAGATATGGCGCGCGAGCGAGGAATTACTGATTTTAAACCTGGGCTTGGTTTACCAGGAACAAAAAAAGACG
AAGCTGAACAAGAGCCAGATTTTATTTATTACTCTATTCGTTATGAAGATATTATGTCTGTCTTAACAGGAATAAAAAAT
GTGAAGTTTGCTGATGAAGAATCAGAGTTTTATCGTTATGATGGCAATTTTTATCTTGTTGTTTTGGATAATCAAAAAGA
AAAAGGCAAGATGCATGTCGAAAGTACCCGTTCACGAATGATGGAATATGGGGAAGCAACAAAAATGAGTCGAGAATTTT
TGCAGGAGTATGGTGAATGTCTTATCGCGACACGTGCTTTAGATGTTCTTAGAAAAATCTAA

Domains

Predicted by InterproScan.

Negative regulator of genetic competence (MecA) (MecA)

(1-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S6FFV7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mecA Lactococcus lactis subsp. lactis strain DGCC12653

99.571

100

0.996
  mecA Lactococcus lactis subsp. cremoris KW2

96.996

100

0.97

Multiple sequence alignment