Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CIG1485E_RS05860 Genome accession   NZ_CP009043
Coordinates   1171862..1172623 (-) Length   253 a.a.
NCBI ID   WP_038454583.1    Uniprot ID   A0A076FGR6
Organism   Campylobacter iguaniorum strain 1485E     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1166862..1177623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CIG1485E_RS05830 (CIG1485E_1164) tatB 1167149..1167619 (+) 471 WP_038454577.1 Sec-independent protein translocase protein TatB -
  CIG1485E_RS05835 (CIG1485E_1165) tatC 1167619..1168380 (+) 762 WP_038454578.1 twin-arginine translocase subunit TatC -
  CIG1485E_RS05840 (CIG1485E_1166) queA 1168373..1169389 (+) 1017 WP_038454579.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CIG1485E_RS05845 (CIG1485E_1167) - 1169399..1170622 (+) 1224 WP_038454580.1 hypothetical protein -
  CIG1485E_RS05850 (CIG1485E_1168) - 1170619..1171488 (-) 870 WP_038454581.1 SAM-dependent methyltransferase -
  CIG1485E_RS05855 (CIG1485E_1169) ruvX 1171485..1171862 (-) 378 WP_038454582.1 Holliday junction resolvase RuvX -
  CIG1485E_RS05860 (CIG1485E_1170) dprA 1171862..1172623 (-) 762 WP_038454583.1 DNA-processing protein DprA Machinery gene
  CIG1485E_RS05865 (CIG1485E_1171) - 1172607..1173719 (-) 1113 WP_051870942.1 divergent polysaccharide deacetylase family protein -
  CIG1485E_RS05870 (CIG1485E_1172) ilvC 1173720..1174742 (-) 1023 WP_038454584.1 ketol-acid reductoisomerase -
  CIG1485E_RS05875 (CIG1485E_1173) - 1174886..1175698 (+) 813 WP_038454585.1 HDOD domain-containing protein -
  CIG1485E_RS05880 (CIG1485E_1174) - 1175695..1177623 (+) 1929 WP_038454586.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 28094.29 Da        Isoelectric Point: 5.7780

>NTDB_id=126301 CIG1485E_RS05860 WP_038454583.1 1171862..1172623(-) (dprA) [Campylobacter iguaniorum strain 1485E]
MDFITKLPSELDRLKKPVQKLYYKGNLELLNLPKVAIVGARKCTPYTKNLVISLASSLRKHGVCVLSGGAIGVDNYAHEG
AFPLTIGIFGNGLDEIYPVQNAKMINQIYSNSLALSEYEPDFKAHSWSFLERNRIVVALSQAVVIAQADFKSGSMASARL
ALDMGIPLFVLPQRLEDSRGTNSLLAKNQANLIDDFDAFSAKFGSLYQEDDEILSFIKINSSFDECYAKFGDKLYEYELE
SKIAIDGIYVRVV

Nucleotide


Download         Length: 762 bp        

>NTDB_id=126301 CIG1485E_RS05860 WP_038454583.1 1171862..1172623(-) (dprA) [Campylobacter iguaniorum strain 1485E]
ATGGACTTTATAACTAAACTCCCAAGCGAGCTTGACAGGCTCAAAAAACCAGTCCAAAAACTCTATTATAAAGGCAATTT
AGAGCTTTTAAATTTACCAAAAGTAGCCATTGTTGGAGCTAGAAAATGCACTCCATATACAAAAAATTTGGTTATCTCTC
TTGCTTCAAGCCTTAGAAAACACGGTGTTTGCGTACTTAGTGGCGGAGCTATCGGGGTTGATAACTACGCTCATGAAGGA
GCTTTTCCACTTACTATAGGTATCTTTGGAAATGGACTTGATGAAATTTACCCAGTTCAAAATGCAAAAATGATAAATCA
AATTTACTCAAATTCTCTTGCTCTAAGTGAGTATGAGCCAGATTTTAAGGCTCATTCTTGGAGCTTTTTGGAGAGAAATC
GCATAGTCGTAGCTCTAAGCCAGGCTGTAGTAATCGCTCAAGCCGATTTCAAAAGTGGCTCAATGGCTAGTGCTAGGCTT
GCTTTGGATATGGGAATCCCGCTCTTTGTCTTGCCTCAAAGGCTTGAAGATAGCAGGGGTACAAACTCGCTTCTAGCTAA
AAATCAAGCAAATTTAATAGATGATTTTGACGCTTTTAGTGCTAAATTTGGAAGTTTATATCAAGAAGATGATGAGATTT
TGAGTTTTATCAAAATAAATTCAAGCTTTGATGAATGCTATGCTAAATTTGGCGACAAGCTTTACGAATACGAATTAGAG
TCCAAAATCGCCATTGATGGCATTTATGTAAGGGTTGTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(7-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A076FGR6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.466

91.7

0.518
  dprA Helicobacter pylori 26695

49.798

97.628

0.486

Multiple sequence alignment