Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   VT08_RS09050 Genome accession   NZ_CP011069
Coordinates   1846948..1848054 (+) Length   368 a.a.
NCBI ID   WP_002991449.1    Uniprot ID   Q48QL2
Organism   Streptococcus pyogenes strain STAB09014     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1841948..1853054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VT08_RS09030 (VT08_09055) hasA 1842640..1843900 (+) 1261 Protein_1758 hyaluronan synthase HasA -
  VT08_RS09035 (VT08_09060) hasB 1843936..1845144 (+) 1209 WP_011285337.1 UDP-glucose 6-dehydrogenase HasB -
  VT08_RS09040 (VT08_09065) hasC 1845326..1846267 (+) 942 WP_065244911.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  VT08_RS09045 (VT08_09070) yaaA 1846533..1846946 (+) 414 WP_002991446.1 S4 domain-containing protein YaaA -
  VT08_RS09050 (VT08_09075) recF 1846948..1848054 (+) 1107 WP_002991449.1 DNA replication/repair protein RecF Machinery gene
  VT08_RS09055 (VT08_09080) - 1848111..1848974 (-) 864 WP_002991450.1 GRP family sugar transporter -
  VT08_RS09060 (VT08_09085) guaB 1849177..1850658 (-) 1482 WP_002991454.1 IMP dehydrogenase -
  VT08_RS09065 (VT08_09090) trpS 1850966..1851988 (-) 1023 WP_002991455.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41780.70 Da        Isoelectric Point: 8.4064

>NTDB_id=126091 VT08_RS09050 WP_002991449.1 1846948..1848054(+) (recF) [Streptococcus pyogenes strain STAB09014]
MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLAGYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIYQQFLH
QLEKNHQKDFFRKNTSVGPHRDNLAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTVQVDSDIH

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=126091 VT08_RS09050 WP_002991449.1 1846948..1848054(+) (recF) [Streptococcus pyogenes strain STAB09014]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGCCTCATTTTCGTCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGAATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTAAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTGGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGTCCACATCGCGATAACTTAGCCTTTTA
CATTAACGGGATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATTCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAACCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTTCACGTAACAAAAGGAACCGTTCAAGTTGATTCTGATATTCACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q48QL2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

62.842

99.457

0.625
  recF Bacillus subtilis subsp. subtilis str. 168

45.455

100

0.462

Multiple sequence alignment