Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   VC76_RS03180 Genome accession   NZ_CP011015
Coordinates   624194..624574 (+) Length   126 a.a.
NCBI ID   WP_002776373.1    Uniprot ID   A0ABN0ERI9
Organism   Campylobacter coli strain FB1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 619194..629574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VC76_RS03160 (VC76_03170) - 619303..621237 (-) 1935 WP_002844636.1 ribonuclease R family protein -
  VC76_RS03165 (VC76_03175) ilvC 621360..622382 (+) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  VC76_RS03170 (VC76_03180) - 622385..623437 (+) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  VC76_RS03175 (VC76_03185) dprA 623427..624197 (+) 771 WP_002776372.1 DNA-processing protein DprA Machinery gene
  VC76_RS03180 (VC76_03190) dprB 624194..624574 (+) 381 WP_002776373.1 Holliday junction resolvase RuvX Machinery gene
  VC76_RS03185 (VC76_03195) - 624585..625439 (+) 855 WP_370323062.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  VC76_RS03190 (VC76_03200) msrA 625662..626162 (-) 501 WP_002792204.1 peptide-methionine (S)-S-oxide reductase MsrA -
  VC76_RS03195 (VC76_03205) ppa 626210..626728 (-) 519 WP_002776378.1 inorganic diphosphatase -
  VC76_RS03200 (VC76_03210) - 626738..627313 (-) 576 WP_002781658.1 adenylate kinase -
  VC76_RS03205 (VC76_03215) aspS 627310..629061 (-) 1752 WP_002822668.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13949.38 Da        Isoelectric Point: 9.5520

>NTDB_id=125709 VC76_RS03180 WP_002776373.1 624194..624574(+) (dprB) [Campylobacter coli strain FB1]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI

Nucleotide


Download         Length: 381 bp        

>NTDB_id=125709 VC76_RS03180 WP_002776373.1 624194..624574(+) (dprB) [Campylobacter coli strain FB1]
ATGAGAGCTTTGGCCTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGCGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

42.063

100

0.421

Multiple sequence alignment