Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   ID09_RS04680 Genome accession   NZ_CP008921
Coordinates   963150..964376 (+) Length   408 a.a.
NCBI ID   WP_024390636.1    Uniprot ID   A0A075SDE7
Organism   Streptococcus suis 6407     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 958150..969376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID09_RS04645 (ID09_04770) - 959155..959490 (+) 336 WP_024381820.1 hypothetical protein -
  ID09_RS04650 (ID09_04775) - 959586..960545 (+) 960 WP_024381821.1 ROK family glucokinase -
  ID09_RS04655 (ID09_04780) - 960671..960949 (+) 279 WP_024381822.1 hypothetical protein -
  ID09_RS04660 (ID09_04785) - 960961..961263 (+) 303 WP_024381823.1 hypothetical protein -
  ID09_RS04665 (ID09_04790) - 961316..962155 (+) 840 WP_024381824.1 thymidylate synthase -
  ID09_RS04670 (ID09_04795) - 962440..962952 (+) 513 WP_024381825.1 dihydrofolate reductase -
  ID09_RS04680 (ID09_04805) clpX 963150..964376 (+) 1227 WP_024390636.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ID09_RS04685 (ID09_04810) yihA 964432..965019 (+) 588 WP_024381827.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  ID09_RS04690 (ID09_04815) ndk 965042..965455 (+) 414 WP_024381828.1 nucleoside-diphosphate kinase -
  ID09_RS04695 (ID09_04820) lepA 965551..967383 (+) 1833 WP_024381829.1 translation elongation factor 4 -
  ID09_RS04700 (ID09_04825) - 967433..967615 (-) 183 WP_002934978.1 4-oxalocrotonate tautomerase -
  ID09_RS04705 (ID09_04830) - 967750..969057 (+) 1308 WP_024390637.1 excalibur calcium-binding domain-containing protein -
  ID09_RS12115 (ID09_04835) - 969118..969342 (+) 225 WP_002934981.1 hypothetical protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45246.77 Da        Isoelectric Point: 4.6713

>NTDB_id=125697 ID09_RS04680 WP_024390636.1 963150..964376(+) (clpX) [Streptococcus suis 6407]
MAVKHTHELIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLNILNNYVIGQDRA
KRALAVAVYNHYKRINFQDSRDENDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHVDTKN
ILFIVGGAFDGIEEIVKQRLGEKIIGFGHNNRAIDEKESYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTTGDLVRIL
TEPKNALVKQYQTLLSYDDVELDFDEDALLAIAEKAIERKTGARGLRSIIEETMLDVMFEVPGQDNVKRVRVTKAAVDGK
EKPLLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=125697 ID09_RS04680 WP_024390636.1 963150..964376(+) (clpX) [Streptococcus suis 6407]
ATGGCAGTTAAGCATACACATGAGCTAATCTATTGCTCATTTTGCGGAAAAAATCAAGAAGAAGTTAAAAAAATTATCGC
AGGGAACAATGTCTTCATTTGTAATGAGTGCGTGGAACTAGCACAGGAAATCATTCGTGAGGAACTGGCAGAAGAAGTTT
TGACAGACTTGGCCGATACGCCAAAGCCACAAGAATTACTCAATATCCTGAACAACTACGTCATCGGACAGGATCGTGCA
AAACGTGCTTTAGCAGTAGCCGTTTACAACCACTACAAACGTATCAATTTCCAAGATAGCCGTGATGAGAACGATGTTGA
TTTGCAAAAATCAAATATCCTTATGATTGGCCCGACTGGTTCAGGAAAAACCTTCCTAGCTCAGACCTTGGCTAAAAGTT
TGAATGTCCCGTTTGCTATTGCCGATGCGACCGCTCTTACTGAGGCGGGTTATGTTGGTGAAGACGTAGAAAATATCCTC
CTCAAACTTTTGCAGGCTGCAGACTTTAACATCGACCGTGCAGAAAGAGGAATTATCTATGTGGATGAAATTGATAAAAT
TGCCAAAAAAGGTGAAAATGTGTCCATTACCCGCGATGTATCTGGTGAAGGTGTCCAGCAAGCTCTCCTAAAAATTATCG
AGGGAACTGTGGCCAGCGTACCACCACAAGGTGGACGCAAACATCCAAACCAAGAAATGATTCACGTGGACACCAAAAAT
ATCCTGTTTATCGTTGGCGGTGCATTTGATGGTATCGAAGAAATCGTCAAGCAGCGTCTCGGTGAAAAAATCATCGGTTT
TGGTCATAATAATCGTGCTATTGATGAAAAAGAATCATACATGCAACATATCATTGCAGACGATATTCAAAAATTCGGTA
TCATTCCAGAGTTGATTGGTCGCTTGCCTGTATTCGCAGCTTTGGACCAATTGACAACAGGGGATTTGGTACGCATTTTG
ACGGAACCGAAGAATGCTCTTGTAAAACAATACCAGACACTCTTGTCTTATGATGACGTGGAGCTTGACTTTGATGAGGA
CGCCTTGTTAGCAATTGCAGAAAAGGCAATTGAACGTAAGACTGGTGCTCGTGGACTTCGCTCCATCATTGAAGAAACGA
TGTTGGATGTCATGTTTGAGGTGCCAGGCCAAGATAACGTTAAACGCGTTCGTGTAACAAAAGCAGCAGTAGACGGTAAG
GAAAAGCCTTTACTAGAAACTGCATAA

Domains

Predicted by InterproScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075SDE7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

83.13

100

0.833
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.96

98.529

0.571

Multiple sequence alignment