Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   ID09_RS03280 Genome accession   NZ_CP008921
Coordinates   677840..678643 (+) Length   267 a.a.
NCBI ID   WP_024382223.1    Uniprot ID   A0A075SCM5
Organism   Streptococcus suis 6407     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 672840..683643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID09_RS03255 (ID09_03305) - 673269..673967 (-) 699 WP_024382219.1 amino acid ABC transporter permease -
  ID09_RS03260 (ID09_03310) - 673982..674821 (-) 840 WP_024382220.1 transporter substrate-binding domain-containing protein -
  ID09_RS03265 (ID09_03315) - 674832..675593 (-) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -
  ID09_RS03270 (ID09_03320) micA 675787..676491 (+) 705 WP_015646623.1 response regulator YycF Regulator
  ID09_RS03275 (ID09_03325) micB 676484..677833 (+) 1350 WP_024379730.1 cell wall metabolism sensor histidine kinase VicK Regulator
  ID09_RS03280 (ID09_03330) vicX 677840..678643 (+) 804 WP_024382223.1 MBL fold metallo-hydrolase Regulator
  ID09_RS03285 (ID09_03335) - 679270..680472 (-) 1203 WP_079376556.1 IS110 family transposase -
  ID09_RS03290 (ID09_03340) - 680781..681305 (+) 525 WP_235181377.1 ATP-binding cassette domain-containing protein -
  ID09_RS12320 - 681593..681955 (+) 363 WP_050571059.1 hypothetical protein -
  ID09_RS12325 - 681982..682326 (+) 345 WP_235181378.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29687.81 Da        Isoelectric Point: 5.7755

>NTDB_id=125695 ID09_RS03280 WP_024382223.1 677840..678643(+) (vicX) [Streptococcus suis 6407]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAVCPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=125695 ID09_RS03280 WP_024382223.1 677840..678643(+) (vicX) [Streptococcus suis 6407]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGGATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCCTTTGGTGTCAGTCATGATGCGGTCTGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCCAACCATGATATTGAAATTTTGCGCTCGGGTTCTTACTCTTGGAACCTCAA
ACAACGGATTTTGTCAGATAAGGGCCACCTTTGTAACGAAGACGGTGCTGATGCCATGATTCGCTCGTTGGGAAATCGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGAGTTGGAGTGGATTTTCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.779

100

0.768

Multiple sequence alignment