Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   B723_RS14575 Genome accession   NZ_CP010945
Coordinates   3167994..3168329 (+) Length   111 a.a.
NCBI ID   WP_017337325.1    Uniprot ID   -
Organism   Pseudomonas fluorescens NCIMB 11764     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3162994..3173329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B723_RS14560 (B723_14590) - 3163911..3164840 (-) 930 WP_031318574.1 GDP-L-fucose synthase -
  B723_RS14565 (B723_14595) gmd 3164862..3165947 (-) 1086 WP_017337322.1 GDP-mannose 4,6-dehydratase -
  B723_RS14570 (B723_14600) - 3165940..3167370 (-) 1431 WP_017337323.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  B723_RS14575 (B723_14605) comE1/comEA 3167994..3168329 (+) 336 WP_017337325.1 helix-hairpin-helix domain-containing protein Machinery gene
  B723_RS32230 - 3168399..3169268 (+) 870 Protein_2910 group II intron maturase-specific domain-containing protein -
  B723_RS14580 (B723_14610) - 3169466..3169729 (+) 264 WP_017337326.1 hypothetical protein -
  B723_RS14585 (B723_14615) - 3169999..3170793 (+) 795 WP_017337327.1 SDR family oxidoreductase -
  B723_RS14590 (B723_14620) fabF 3170825..3172099 (+) 1275 WP_017337328.1 beta-ketoacyl-ACP synthase II -
  B723_RS14595 (B723_14625) - 3172096..3172653 (-) 558 WP_017337329.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 11604.25 Da        Isoelectric Point: 5.1088

>NTDB_id=125468 B723_RS14575 WP_017337325.1 3167994..3168329(+) (comE1/comEA) [Pseudomonas fluorescens NCIMB 11764]
MRTGYFYSLVFAVLTSASIAAVAAPTVKPEAGNAPLVMDISPKAGSGKVDLNQADAPTLQRELSGVGEAKANAIVAYRES
NGPFASLDELLEVKGIGKAILDKNRDKLEVN

Nucleotide


Download         Length: 336 bp        

>NTDB_id=125468 B723_RS14575 WP_017337325.1 3167994..3168329(+) (comE1/comEA) [Pseudomonas fluorescens NCIMB 11764]
ATGCGTACTGGCTATTTCTACTCTCTGGTTTTTGCCGTGCTCACCAGCGCCTCGATCGCGGCGGTTGCTGCGCCGACGGT
GAAACCTGAGGCAGGTAATGCACCTTTGGTGATGGATATTTCCCCCAAAGCCGGGTCTGGCAAAGTCGATCTGAACCAAG
CTGATGCGCCAACCCTGCAGCGCGAGCTGTCCGGAGTAGGGGAGGCCAAAGCCAACGCGATTGTTGCGTATCGTGAGAGT
AATGGGCCGTTTGCGTCATTGGACGAGTTGCTTGAGGTGAAGGGGATTGGCAAAGCGATTCTGGATAAGAATCGCGATAA
GCTTGAGGTTAACTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(47-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

41.525

100

0.441
  comEA/comE1 Glaesserella parasuis strain SC1401

40

94.595

0.378

Multiple sequence alignment