Detailed information NTG0124883

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: RDF_RS10415
• Genome accession: NZ_CP010867
• Coordinates: 2069220..2070329 (+)
• Length: 369 a.a.
• NCBI ID: WP_000264870.1
• Uniprot ID: Q3JYE9
• Organism: Streptococcus agalactiae strain SS1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2064220..2075329

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RDF_RS10390 (RDF_2037)	-	2064592..2065431 (-)	840	WP_000181758.1	energy-coupling factor ABC transporter ATP-binding protein	-
RDF_RS10395 (RDF_2038)	pgsA	2065431..2065973 (-)	543	WP_000239225.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
RDF_RS10400 (RDF_2039)	yfmH	2066096..2067379 (-)	1284	WP_000217762.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
RDF_RS10405 (RDF_2040)	yfmF	2067381..2068625 (-)	1245	WP_000706188.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
RDF_RS10410 (RDF_2041)	yaaA	2068864..2069217 (+)	354	WP_000384869.1	S4 domain-containing protein YaaA	-
RDF_RS10415 (RDF_2042)	recF	2069220..2070329 (+)	1110	WP_000264870.1	DNA replication/repair protein RecF	Machinery gene
RDF_RS10420 (RDF_2043)	-	2070341..2071207 (-)	867	WP_000398683.1	GRP family sugar transporter	-
RDF_RS10425 (RDF_2044)	-	2071263..2071925 (-)	663	WP_001868421.1	helix-turn-helix domain-containing protein	-
RDF_RS10430 (RDF_2045)	guaB	2072000..2073481 (-)	1482	WP_000073440.1	IMP dehydrogenase	-
RDF_RS10435 (RDF_2046)	-	2073638..2074123 (-)	486	WP_001034427.1	arginine repressor	-
RDF_RS10440 (RDF_2047)	-	2074133..2074813 (-)	681	WP_000628848.1	Crp/Fnr family transcriptional regulator	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 42471.27 Da
• Isoelectric Point: 7.3132

>NTDB_id=124883 RDF_RS10415 WP_000264870.1 2069220..2070329(+) (recF) [Streptococcus agalactiae strain SS1]
MWIKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKELVHFKHHDVQITGEVIRKSGH
LSLDIQLSEKGRITKVNHLKQAKLSDYIGAMTVVLFAPEDLQLVKGAPSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQR
NTYLKTTNNVDKTFLSVLDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEFTDKSSIREHFLN
QLSKSHSRDIFKKNTSIGPHRDDITFFINDINATFGSQGQQRSLILSLKLAEIELIKTVTNDYPILLLDDVMSELDNHRQ
LKLLEGIKENVQTFITTTSLEHLSALPDQLKIFNVSDGTISINEKKATD

Nucleotide

• Length: 1110 bp

>NTDB_id=124883 RDF_RS10415 WP_000264870.1 2069220..2070329(+) (recF) [Streptococcus agalactiae strain SS1]
ATGTGGATAAAAAATATTTCTTTAAAACATTATCGTAATTATGAAGAAGCACAAGTAGATTTTTCACCCAACCTCAATAT
TTTCATTGGCCGCAATGCTCAAGGAAAGACAAATTTTTTAGAAGCAATCTACTTCTTGGCTTTGACTCGAAGTCATCGTA
CCCGTTCTGATAAAGAACTTGTACATTTTAAACACCATGATGTACAAATTACAGGTGAGGTAATCCGCAAAAGCGGCCAT
CTTAGCTTAGATATTCAATTATCTGAAAAAGGAAGAATCACTAAGGTTAACCATCTTAAACAGGCAAAATTATCTGATTA
TATTGGGGCTATGACTGTCGTACTTTTTGCCCCTGAAGATCTTCAATTAGTTAAAGGTGCACCTAGCCTAAGACGGAAAT
TTTTAGATATAGATATTGGACAAATTAAGCCAACGTACTTAGCTGAACTTTCAAATTACAATCATGTATTAAAACAAAGA
AACACTTATCTAAAAACTACTAATAACGTCGACAAAACTTTTTTATCAGTCCTTGATGAACAATTAGCTGATTATGGAAG
TCGTGTCATTGAACACCGTTTTGATTTTATCCAAGCCCTAAATGATGAAGCGGACAAGCATCACTACATTATCAGTACTG
AGTTAGAACATTTATCTATTCACTACAAATCGTCAATAGAGTTTACAGATAAGTCAAGTATTAGGGAACATTTTTTAAAC
CAATTATCTAAAAGCCACTCAAGAGACATCTTTAAGAAAAACACAAGCATCGGACCTCATCGTGATGATATTACTTTCTT
TATTAATGATATCAATGCTACTTTTGGTAGCCAAGGGCAACAAAGAAGCCTTATTTTATCATTGAAATTAGCAGAAATTG
AGCTAATAAAAACCGTTACCAACGATTATCCGATTCTCTTACTTGACGACGTCATGAGTGAACTTGACAACCATCGTCAA
CTAAAACTCTTAGAGGGAATCAAAGAGAATGTTCAAACATTTATTACTACAACAAGTTTAGAGCATTTAAGTGCTTTACC
TGATCAACTCAAAATCTTTAATGTTAGTGATGGTACTATTAGTATTAATGAAAAAAAAGCAACAGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-359)

3D structure

• AlphaFold DB: Q3JYE9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	63.636	98.374	0.626
recF	Bacillus subtilis subsp. subtilis str. 168	44.837	99.729	0.447