Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   RDF_RS05155 Genome accession   NZ_CP010867
Coordinates   1008066..1009136 (-) Length   356 a.a.
NCBI ID   WP_000817933.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1003066..1014136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDF_RS05135 (RDF_0968) - 1003601..1004353 (+) 753 WP_000923535.1 ABC transporter ATP-binding protein -
  RDF_RS05140 (RDF_0969) - 1004355..1006310 (+) 1956 WP_000499553.1 FtsX-like permease family protein -
  RDF_RS05145 (RDF_0970) braR 1006420..1007088 (+) 669 WP_000076874.1 response regulator transcription factor Regulator
  RDF_RS05150 (RDF_0971) - 1007085..1008023 (+) 939 WP_000620981.1 sensor histidine kinase -
  RDF_RS05155 (RDF_0972) xerS 1008066..1009136 (-) 1071 WP_000817933.1 tyrosine recombinase XerS Machinery gene
  RDF_RS05160 (RDF_0973) - 1009589..1011250 (+) 1662 WP_000093960.1 peptide ABC transporter substrate-binding protein -
  RDF_RS05165 (RDF_0974) - 1011283..1012056 (-) 774 WP_000622398.1 DUF3307 domain-containing protein -
  RDF_RS05170 (RDF_0975) - 1012046..1012732 (-) 687 WP_000280308.1 SatD family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41360.56 Da        Isoelectric Point: 9.4625

>NTDB_id=124837 RDF_RS05155 WP_000817933.1 1008066..1009136(-) (xerS) [Streptococcus agalactiae strain SS1]
MKRELLLEKIDELKEIMPWYVLEYYQSKLSVPYSFTTLYEYLKEYRRFLEWLLDSGVANCHHIAEIELSVLENLTKKDME
AFILYLRERPLLNANTRQNGVSQTTINRTLSALSSLFKYLTEEVENADGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGNETIEFLEYINCEYQNKLSKRALAFFNKNKERDLAIIALLLASGVRLSEAVNLDLKDINLNVMVIDVTRKGGKRDS
VNVASFAKPYLANYLDIRKNRYKAENQDIALFLSEYRGVPNRIDASSVEKMVAKYSQDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=124837 RDF_RS05155 WP_000817933.1 1008066..1009136(-) (xerS) [Streptococcus agalactiae strain SS1]
ATGAAACGTGAATTACTACTCGAAAAAATCGATGAACTAAAAGAAATTATGCCTTGGTATGTTCTAGAATATTATCAATC
AAAGCTTTCTGTTCCTTATAGTTTCACAACACTCTACGAATATTTAAAAGAATATAGACGTTTTCTTGAATGGTTATTGG
ATTCTGGTGTTGCTAATTGTCATCACATTGCAGAAATTGAGCTTTCAGTTTTAGAAAACCTTACTAAAAAAGATATGGAA
GCTTTTATACTATATTTACGAGAACGCCCTTTATTAAATGCTAACACAAGGCAAAATGGGGTGTCTCAAACCACCATTAA
CAGAACTCTATCTGCCTTATCTAGTCTTTTCAAATACCTTACTGAAGAGGTTGAGAATGCTGACGGGGAGCCTTACTTTT
ATCGCAATGTCATGAAAAAAGTCTCAACCAAAAAGAAAAAGGAAACTTTAGCTTCTCGGGCAGAAAATATTAAACAAAAG
TTATTTTTGGGCAATGAAACGATAGAATTCTTAGAGTATATAAATTGTGAATATCAAAACAAACTTTCCAAACGTGCTTT
AGCTTTTTTCAACAAAAATAAAGAGAGAGATTTAGCTATTATTGCTTTGCTACTAGCTTCAGGAGTGCGTCTATCTGAGG
CAGTAAACTTAGATTTAAAGGATATTAACCTTAATGTAATGGTTATTGATGTCACACGAAAAGGGGGGAAAAGGGACTCT
GTCAATGTCGCTAGCTTTGCGAAGCCCTACCTTGCTAATTATTTAGACATCCGTAAAAATAGATACAAAGCAGAAAATCA
GGACATTGCTCTATTTTTATCAGAATACCGTGGGGTGCCAAATCGTATTGATGCTTCAAGTGTAGAGAAAATGGTTGCTA
AGTATTCCCAGGATTTTAAGGTTCGTGTAACACCTCATAAACTAAGGCATACTCTTGCTACTAGGCTATATGATGCTACA
AAATCTCAAGTATTAGTTAGCCACCAACTAGGTCATGCTTCCACTCAAGTTACTGACCTATATACCCATATTGTTAACGA
TGAACAAAAGAACGCTTTAGATAAACTATAG

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(184-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.427

100

0.834

Multiple sequence alignment