Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   TK78_RS19860 Genome accession   NZ_CP010833
Coordinates   4494163..4495575 (-) Length   470 a.a.
NCBI ID   WP_075265677.1    Uniprot ID   -
Organism   Streptomyces sp. Tue 6075 strain Tue6075     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4489163..4500575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TK78_RS19840 (TK78_19445) - 4489792..4490463 (-) 672 WP_075265674.1 SigE family RNA polymerase sigma factor -
  TK78_RS19845 (TK78_19450) - 4490624..4491538 (-) 915 WP_065485349.1 A/G-specific adenine glycosylase -
  TK78_RS19850 (TK78_19455) - 4491844..4492575 (+) 732 WP_075265675.1 hypothetical protein -
  TK78_RS19855 (TK78_19460) disA 4492958..4494082 (-) 1125 WP_075265676.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  TK78_RS19860 (TK78_19465) radA/sms 4494163..4495575 (-) 1413 WP_075265677.1 DNA repair protein RadA Machinery gene
  TK78_RS19865 (TK78_19470) - 4495769..4497760 (+) 1992 WP_075265678.1 hypothetical protein -
  TK78_RS19870 (TK78_19475) - 4497855..4498718 (-) 864 WP_075265679.1 hypothetical protein -
  TK78_RS19875 (TK78_19480) - 4498758..4499708 (+) 951 WP_075265680.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49538.64 Da        Isoelectric Point: 8.0042

>NTDB_id=124745 TK78_RS19860 WP_075265677.1 4494163..4495575(-) (radA/sms) [Streptomyces sp. Tue 6075 strain Tue6075]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRTATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAATDDHRTLYVTAEESASQVRLRADRIKAINDHLYLAAETDLSAV
LAHLDEVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDVAVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAVALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLSEAHRLGFTHALVPTDPGRVPAGMKVTEVADMGDALRVLPRRSRQEAPQEDNARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=124745 TK78_RS19860 WP_075265677.1 4494163..4495575(-) (radA/sms) [Streptomyces sp. Tue 6075 strain Tue6075]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGTCCGTCCTACCGCTGCACCGAATGCGGCTGGACGACCGCCAAATGGCT
CGGCCGCTGCCCCGAGTGCCAGGCATGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCCGCCGTGCGCACGACGGCGGCAG
GACGGGTCTCCACCGCCGCCCTGCCGATCGGCCAGGTCGACAGCCGGACGGCCACGGCCCGCTCCACCGGCGTCGGCGAG
CTGGACCGGGTGCTGGGCGGCGGGCTCGTGCCGGGCGCGGTCGTGCTGCTGGCGGGCGAGCCGGGCGTCGGCAAGTCGAC
GTTGCTGCTGGACGTGGCGGCCAAGGCGGCGACCGACGACCACCGCACGCTCTATGTGACCGCCGAGGAGTCCGCGAGCC
AGGTCCGGCTGCGGGCCGACCGGATCAAGGCGATCAACGACCACCTCTACCTCGCGGCGGAGACCGATCTGTCGGCGGTG
CTCGCACATCTGGACGAGGTCAAGCCGTCGCTGCTGATCCTGGACTCGGTGCAGACGGTCGCCTCGCCCGAGATCGACGG
CGCGCCCGGCGGGATGGCGCAGGTCCGGGAGGTCGCCGGGGCGCTGATCCGGGCGTCCAAGGAGCGCGGGATGGCCACGC
TGCTGGTCGGCCATGTGACGAAGGACGGTGCGATCGCCGGGCCCCGGCTGCTGGAGCACCTGGTGGACGTGGTGCTGTCC
TTCGAGGGCGACCGGCACGCCCGGCTGCGGCTGGTGCGCGGCGTCAAGAACCGTTACGGGGCGACCGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACCGGTCTCGCCGACCCCTCGGGCCTCTTCCTGACCCGCCGCGACGTCGCCGTGC
CGGGCACCTGCCTCACCGTGACGCTGGAGGGCAAGCGGCCCCTGGTCGCCGAGGTGCAGGCGCTCACCGTCGACTCGCAG
ATCCCCTCGCCCCGGCGCACGACCTCGGGCCTGGAGACCTCCCGGGTCTCGATGATGCTCGCCGTGCTGGAGCAGCGGGG
CCGGATCAGCGCGCTCGGCAAGCGGGACATCTACAGCGCGACGGTGGGCGGCGTGAAGCTCACGGAGCCCGCCGCGGACC
TGGCGGTCGCGCTCGCGCTGGCCAGCGCGGCCAGCGACACCCCGCTCCCGAAGAACCTGGTCGCGATCGGTGAGGTGGGG
CTCGCGGGCGAGGTCAGAAGGGTCACCGGGGTGCAGAGAAGACTGTCCGAGGCCCACCGTCTGGGCTTCACCCACGCCCT
CGTGCCGACCGATCCGGGGCGGGTTCCGGCCGGTATGAAGGTCACGGAAGTCGCCGACATGGGCGACGCTCTGCGGGTCC
TCCCGCGCCGCTCTCGCCAGGAGGCACCACAGGAGGACAACGCGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(85-223)

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.709

96.383

0.421
  radA Streptococcus pneumoniae Rx1

44.522

91.277

0.406
  radA Streptococcus pneumoniae D39

44.522

91.277

0.406
  radA Streptococcus pneumoniae R6

44.522

91.277

0.406
  radA Streptococcus pneumoniae TIGR4

44.522

91.277

0.406
  radA Streptococcus mitis SK321

44.522

91.277

0.406
  radA Streptococcus mitis NCTC 12261

44.289

91.277

0.404

Multiple sequence alignment