Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   TO73_RS06635 Genome accession   NZ_CP010822
Coordinates   1228777..1231080 (+) Length   767 a.a.
NCBI ID   WP_003047949.1    Uniprot ID   A0ABM5VM40
Organism   Thermus aquaticus Y51MC23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1223777..1236080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TO73_RS06615 (TO73_1370) - 1224602..1225474 (-) 873 WP_003047940.1 3-hydroxyacyl-CoA dehydrogenase family protein -
  TO73_RS06620 (TO73_1371) - 1225490..1226347 (-) 858 WP_003047944.1 DMT family transporter -
  TO73_RS06625 (TO73_1372) - 1226337..1227557 (-) 1221 WP_003047946.1 pitrilysin family protein -
  TO73_RS06630 (TO73_1373) - 1227550..1228761 (-) 1212 WP_040684458.1 pitrilysin family protein -
  TO73_RS06635 (TO73_1374) recG/mmsA 1228777..1231080 (+) 2304 WP_003047949.1 ATP-dependent DNA helicase RecG Machinery gene
  TO73_RS06640 (TO73_1375) - 1231086..1231838 (+) 753 WP_003047951.1 hypothetical protein -
  TO73_RS06645 (TO73_1376) - 1231822..1232811 (-) 990 WP_003047954.1 pectin acetylesterase-family hydrolase -

Sequence

Protein


Download         Length: 767 a.a.        Molecular weight: 85535.42 Da        Isoelectric Point: 9.3559

>NTDB_id=124671 TO73_RS06635 WP_003047949.1 1228777..1231080(+) (recG/mmsA) [Thermus aquaticus Y51MC23]
MGSVKEGEVRERLLRPILRELQDGARDRVVVGGLEGLVRNLARPFPKLLDLFQGYGEKDPEARKKVLEEALRILQDGQEK
APPPGPKPRLKPQDPAHLLAPPQSRKKLSELGLHTVRDVLHHYPRRYEDRRALPGVRYLEDGQKATLSVKVLAKELVRTP
KKGMQLVQVKAMDAWGWRLALVWFNQPWVLSQIEEGATLIVTGRVQRRNGVQLLVEHFEDEGTESLSTGRIVPIYPAKEG
VGQAFLRRTVHRALEMALPLPDPVEPYREGLALMPYSQALRAIHFPEDEEALKKALLRLKFDEYLLLELKALLDAGGVVL
GRAFRVEEAWVEAFKKALPFPLTRAQERVMAEIAQDMQSPRQMARLLQGDVGSGKTVVAAFALYLAAMNGAQGALMAPTE
ILARQHFQNLTRYLFPLGVRVELLLGSTPAREREAILARLRSGEAQVAVGTHALIQEGVEFQDLGLAVVDEEHRFGVLQR
RALLKMAKTPPDVLVMSATPIPRSLALTLYGDLEVSVLDEMPPGRTPVKTKVLPHRLRLQAYAFAREEIKKGHQVFVVAP
AIEESELDLKAATLLYEELQGLLPEARIALLHGKMPAREKEAVMEAFRQGAYDLLVSTTVIEVGVDIPRATLIIVENAER
FGLAQLHQLRGRVGRGGLPGYAIFLAGEASQKTMKRLKVLEASTDGFYIAEMDLKLRGPGELRGTRQSGYPELRLGDLAE
DTEVIERARALAKAIVEEDPDLSLPKHQALKEELRAQAERIGFREVI

Nucleotide


Download         Length: 2304 bp        

>NTDB_id=124671 TO73_RS06635 WP_003047949.1 1228777..1231080(+) (recG/mmsA) [Thermus aquaticus Y51MC23]
ATGGGGAGCGTGAAGGAGGGGGAGGTCCGGGAAAGGCTCCTGAGGCCCATCCTCCGGGAGCTCCAGGACGGGGCCAGGGA
CCGGGTGGTGGTGGGGGGCCTCGAGGGCCTGGTCCGCAACCTGGCCCGCCCCTTTCCCAAACTCCTGGACCTGTTCCAGG
GCTACGGGGAGAAGGACCCCGAGGCGCGGAAGAAGGTCCTGGAGGAGGCCCTCCGCATCCTTCAGGACGGCCAGGAGAAG
GCCCCACCCCCCGGGCCAAAGCCCCGGCTGAAGCCCCAGGACCCCGCCCACCTCCTGGCCCCGCCCCAAAGCCGGAAAAA
GCTCTCCGAGCTGGGCCTTCACACCGTGCGGGACGTCCTCCACCACTACCCCCGCCGCTACGAGGACCGCCGGGCCCTCC
CCGGCGTGCGCTACCTGGAGGACGGCCAGAAGGCCACCCTCTCGGTCAAGGTCCTGGCCAAGGAGCTGGTAAGGACCCCC
AAGAAGGGGATGCAGCTGGTCCAGGTCAAGGCCATGGACGCCTGGGGGTGGCGGCTTGCCCTGGTCTGGTTCAATCAGCC
CTGGGTCCTCTCCCAGATAGAGGAGGGGGCCACGCTGATCGTCACCGGCCGGGTGCAGCGTAGGAACGGGGTCCAGCTTC
TGGTGGAGCACTTTGAGGACGAGGGCACGGAGTCCCTCTCCACCGGGCGCATCGTCCCCATCTACCCCGCCAAGGAGGGG
GTGGGGCAGGCCTTTTTGCGCCGCACCGTCCACCGGGCCCTGGAGATGGCCCTGCCCCTCCCCGACCCCGTGGAGCCCTA
CCGGGAGGGCCTGGCCCTCATGCCCTATTCCCAGGCCCTCAGGGCCATCCACTTCCCCGAGGACGAGGAGGCCCTCAAGA
AGGCCCTTCTCCGCCTGAAGTTTGACGAGTACCTCCTCCTGGAGCTCAAGGCCCTCCTGGACGCCGGGGGGGTGGTCCTG
GGGCGGGCCTTCCGGGTGGAGGAGGCCTGGGTGGAGGCCTTTAAAAAGGCCCTCCCCTTCCCCCTCACCCGGGCCCAGGA
GCGGGTCATGGCCGAGATCGCCCAGGACATGCAAAGCCCCCGCCAGATGGCCCGCCTCCTCCAGGGAGACGTGGGCTCGG
GGAAGACGGTGGTGGCGGCCTTCGCCCTCTATTTGGCCGCCATGAACGGGGCCCAGGGCGCCCTCATGGCCCCCACGGAG
ATCCTGGCCCGGCAGCACTTCCAGAACCTCACCCGCTACCTCTTCCCCCTGGGGGTGAGGGTGGAGCTCCTTTTGGGCTC
CACGCCGGCCCGGGAGCGGGAGGCCATCCTGGCCCGCCTCCGCTCCGGCGAGGCCCAGGTGGCCGTGGGCACCCACGCCC
TCATCCAGGAGGGGGTGGAGTTCCAAGACCTGGGCCTGGCCGTGGTGGACGAGGAGCACCGCTTTGGGGTTTTGCAGCGG
CGGGCCCTCCTCAAGATGGCCAAGACCCCGCCCGACGTCCTGGTCATGTCGGCCACGCCCATCCCCCGCTCCCTGGCCCT
CACCCTCTACGGGGACCTGGAGGTGAGCGTCCTGGACGAGATGCCCCCGGGCCGCACCCCGGTGAAGACCAAGGTCCTCC
CCCACCGCCTCCGCCTCCAGGCCTACGCCTTCGCCCGGGAGGAGATCAAAAAGGGGCACCAGGTCTTCGTGGTGGCCCCG
GCCATTGAGGAGTCCGAGCTGGACCTGAAGGCGGCCACCCTCCTCTACGAGGAGCTCCAAGGCCTCCTCCCCGAGGCCAG
GATCGCCCTCCTCCACGGGAAGATGCCCGCCCGGGAGAAGGAGGCGGTCATGGAGGCCTTCCGCCAGGGGGCCTACGACC
TTTTGGTCTCCACCACGGTCATTGAGGTGGGGGTGGACATCCCCCGGGCCACCCTGATCATCGTGGAAAACGCCGAGCGC
TTCGGCCTGGCCCAGCTTCACCAGCTGAGGGGCCGAGTGGGGCGGGGAGGGCTTCCCGGCTACGCCATCTTCCTAGCGGG
GGAGGCCAGCCAGAAGACCATGAAAAGGCTAAAGGTCCTCGAGGCCTCCACCGACGGCTTTTACATCGCCGAGATGGACC
TGAAGCTCCGGGGCCCCGGGGAGCTCAGGGGCACCCGGCAGTCGGGCTACCCGGAGCTTCGGCTAGGCGACCTGGCGGAG
GACACCGAGGTTATAGAGCGGGCGCGGGCCCTGGCCAAGGCCATCGTGGAGGAGGACCCGGACCTCTCCCTTCCCAAGCA
CCAGGCCCTCAAGGAGGAGCTGAGGGCCCAGGCGGAGCGGATCGGCTTCCGGGAGGTCATCTAG

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(104-254)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(684-756)

DEAD/DEAH box helicase (DEAD)

(344-501)

Helicase conserved C-terminal domain (Helicase_C)

(547-657)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

43.07

87.484

0.377
  recG/mmsA Streptococcus pneumoniae R36A

43.07

87.484

0.377
  recG Neisseria meningitidis strain C311

41.529

86.962

0.361

Multiple sequence alignment