Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | TO73_RS06580 | Genome accession | NZ_CP010822 |
| Coordinates | 1215873..1218077 (+) | Length | 734 a.a. |
| NCBI ID | WP_040684457.1 | Uniprot ID | A0ABM5VM53 |
| Organism | Thermus aquaticus Y51MC23 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1210873..1223077
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| TO73_RS06550 (TO73_1356) | - | 1211381..1211809 (-) | 429 | WP_003047906.1 | hypothetical protein | - |
| TO73_RS06555 (TO73_1357) | - | 1211802..1212113 (-) | 312 | WP_003047908.1 | DUF3234 domain-containing protein | - |
| TO73_RS06560 (TO73_1358) | - | 1212131..1212838 (+) | 708 | WP_003047911.1 | TlyA family RNA methyltransferase | - |
| TO73_RS06565 (TO73_1359) | - | 1212825..1213820 (-) | 996 | WP_003047914.1 | aspartate-semialdehyde dehydrogenase | - |
| TO73_RS06570 (TO73_1360) | - | 1213817..1214065 (-) | 249 | WP_003047916.1 | hypothetical protein | - |
| TO73_RS06575 (TO73_1362) | - | 1214235..1215755 (-) | 1521 | WP_003047918.1 | glycine--tRNA ligase | - |
| TO73_RS06580 (TO73_1363) | clpC | 1215873..1218077 (+) | 2205 | WP_040684457.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| TO73_RS06585 (TO73_1364) | radA | 1218084..1219355 (+) | 1272 | WP_003047924.1 | DNA repair protein RadA | Machinery gene |
| TO73_RS06590 (TO73_1365) | - | 1219352..1220350 (+) | 999 | WP_003047927.1 | PIN/TRAM domain-containing protein | - |
| TO73_RS06595 (TO73_1366) | - | 1220334..1220915 (-) | 582 | WP_003047929.1 | hypothetical protein | - |
| TO73_RS06600 (TO73_1367) | sucC | 1220999..1222135 (+) | 1137 | WP_003047932.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| TO73_RS06605 (TO73_1368) | sucD | 1222132..1222998 (+) | 867 | WP_003047935.1 | succinate--CoA ligase subunit alpha | - |
Sequence
Protein
Download Length: 734 a.a. Molecular weight: 81311.21 Da Isoelectric Point: 5.2685
>NTDB_id=124669 TO73_RS06580 WP_040684457.1 1215873..1218077(+) (clpC) [Thermus aquaticus Y51MC23]
MNRYDDRARLVFHYAREEGSRLGHSMIGPEHLLLGLMREGGTAARILQEYGASLEAMRRMVEELVGRGEGSRTGEPPAIT
PRARRVMELASAEARNMGAQVIGTEHILLGIIREGDGIAYRILSHFAKDVDAIRWRILAMADNREREKPVNTPFLDEYGR
DLTKEAREGKLDPVIGRQEEINRVIQILARRTKNNPVLIGDPGVGKTAIVEGLAQAIVEGRVPPILKGARVVAIDLAGVV
AGTKYRGEFEERLRQIIEELKNAKVIAFIDELHTLIGAGGAEGTLDAANILKPALARGEIQVIGATTTGEYHRYIEKDAA
LERRFQPVIVLEPSPEETLEILKGLRPRYEAHHGVIIPDEILELSVKIGIRSLPGRNFPDKAIDLIDEAASRVRLNASLG
LPVAEEEDGTPVVTREDIEAVVDSWGGVYVDDKDDEKLMHLEEELRKRVVGQEEAIKALANALRRARVGLGGRTRVAASF
LFVGQSGVGKTQLAKALAEVLFGSERALIRFDMSEFQEPHSISKLIGAPPGYVGYEQGGRLTEAVRRQPFSVVLLDEIEK
AHPDIYNTFLQVLDEGRLTDGMGRTVDFRRVILIMTSNTGYNVGPAIGFTSKEVDTESPLKALFTPEFLDRLDEVIRFRP
LTEEELVRVAELMLEEIQKELKARDVEVTFAPEVARFVVDQAPKTGSARAIRGVIRERIEDPLSLALLKKPTGRLYVTVE
DGGLAFHEVEEFLV
MNRYDDRARLVFHYAREEGSRLGHSMIGPEHLLLGLMREGGTAARILQEYGASLEAMRRMVEELVGRGEGSRTGEPPAIT
PRARRVMELASAEARNMGAQVIGTEHILLGIIREGDGIAYRILSHFAKDVDAIRWRILAMADNREREKPVNTPFLDEYGR
DLTKEAREGKLDPVIGRQEEINRVIQILARRTKNNPVLIGDPGVGKTAIVEGLAQAIVEGRVPPILKGARVVAIDLAGVV
AGTKYRGEFEERLRQIIEELKNAKVIAFIDELHTLIGAGGAEGTLDAANILKPALARGEIQVIGATTTGEYHRYIEKDAA
LERRFQPVIVLEPSPEETLEILKGLRPRYEAHHGVIIPDEILELSVKIGIRSLPGRNFPDKAIDLIDEAASRVRLNASLG
LPVAEEEDGTPVVTREDIEAVVDSWGGVYVDDKDDEKLMHLEEELRKRVVGQEEAIKALANALRRARVGLGGRTRVAASF
LFVGQSGVGKTQLAKALAEVLFGSERALIRFDMSEFQEPHSISKLIGAPPGYVGYEQGGRLTEAVRRQPFSVVLLDEIEK
AHPDIYNTFLQVLDEGRLTDGMGRTVDFRRVILIMTSNTGYNVGPAIGFTSKEVDTESPLKALFTPEFLDRLDEVIRFRP
LTEEELVRVAELMLEEIQKELKARDVEVTFAPEVARFVVDQAPKTGSARAIRGVIRERIEDPLSLALLKKPTGRLYVTVE
DGGLAFHEVEEFLV
Nucleotide
Download Length: 2205 bp
>NTDB_id=124669 TO73_RS06580 WP_040684457.1 1215873..1218077(+) (clpC) [Thermus aquaticus Y51MC23]
ATGAACAGGTACGACGATCGCGCCAGGCTGGTCTTCCACTACGCGAGGGAGGAGGGGAGCCGCTTAGGCCACTCCATGAT
CGGCCCGGAGCACCTCCTCCTGGGCCTGATGCGCGAGGGGGGCACGGCGGCCCGCATCCTCCAGGAGTACGGGGCGAGCC
TCGAGGCCATGCGCCGCATGGTGGAGGAGCTGGTGGGCCGCGGCGAGGGGAGCCGCACCGGGGAACCCCCCGCCATCACG
CCCAGGGCGAGGCGGGTCATGGAGCTGGCCAGCGCCGAGGCCCGCAACATGGGGGCCCAGGTGATCGGCACCGAGCACAT
CCTCCTGGGCATCATCCGCGAAGGGGACGGGATCGCCTACCGCATCCTCTCCCACTTCGCCAAGGACGTGGACGCCATCC
GCTGGCGCATCCTGGCCATGGCGGATAACCGCGAGCGGGAAAAGCCCGTGAACACGCCTTTCCTGGACGAGTACGGCCGC
GACCTCACCAAGGAGGCCCGGGAAGGGAAGCTGGACCCGGTGATCGGCCGCCAGGAGGAGATCAACCGGGTGATCCAGAT
CCTGGCCCGCCGCACCAAGAACAACCCGGTGCTCATCGGGGACCCCGGGGTGGGCAAGACCGCCATCGTGGAAGGGCTGG
CCCAGGCCATCGTGGAGGGCCGGGTGCCCCCCATCCTCAAGGGGGCCCGGGTGGTGGCCATTGACCTGGCCGGGGTGGTG
GCGGGCACCAAGTACCGGGGCGAGTTTGAGGAGCGCCTGCGCCAGATCATTGAGGAGCTCAAAAACGCCAAGGTCATCGC
CTTCATTGACGAGCTCCACACCCTGATCGGCGCCGGGGGGGCCGAGGGCACCCTGGACGCCGCCAACATCCTCAAGCCCG
CCCTGGCCCGGGGCGAGATCCAGGTCATCGGGGCCACCACCACCGGGGAGTACCACCGCTACATAGAGAAAGACGCCGCC
CTGGAGCGGCGCTTCCAGCCCGTCATCGTCCTGGAGCCCTCCCCAGAGGAGACCCTGGAGATCCTAAAAGGCCTCCGGCC
CCGCTACGAGGCCCACCACGGGGTCATCATCCCCGACGAGATCCTGGAGCTTTCCGTCAAGATCGGCATCCGTTCCCTCC
CGGGGCGCAACTTCCCCGACAAGGCCATTGACCTCATTGACGAGGCCGCCAGCCGGGTCCGCCTCAACGCCTCCCTAGGC
CTCCCCGTAGCCGAGGAAGAGGACGGCACCCCGGTGGTCACCCGGGAGGACATTGAGGCCGTGGTGGACTCCTGGGGCGG
GGTCTACGTGGACGACAAGGACGACGAGAAGCTCATGCACCTGGAGGAGGAGCTCAGAAAGCGGGTGGTGGGCCAGGAGG
AGGCCATCAAGGCCCTGGCCAACGCCCTCCGCCGGGCCCGGGTGGGCCTTGGGGGGAGGACCAGGGTGGCGGCCAGCTTC
CTCTTCGTGGGCCAAAGCGGCGTGGGCAAGACCCAGCTGGCCAAGGCCCTGGCCGAGGTCCTCTTCGGCTCGGAGCGGGC
CCTCATCCGCTTTGACATGTCCGAGTTCCAGGAGCCCCACTCCATCTCCAAGCTGATCGGGGCCCCTCCCGGCTACGTGG
GCTACGAGCAGGGGGGCCGCCTCACCGAGGCCGTCCGCCGCCAGCCCTTCAGCGTGGTCCTCCTGGACGAGATTGAGAAG
GCCCACCCCGACATCTACAACACCTTCCTCCAGGTCCTGGACGAGGGCCGCCTCACCGACGGCATGGGGCGGACCGTGGA
CTTCCGCCGGGTCATCCTCATCATGACCTCCAACACCGGCTACAACGTGGGCCCGGCCATCGGCTTCACCTCCAAGGAGG
TGGACACCGAGTCCCCCTTGAAGGCCCTCTTCACCCCCGAGTTCCTGGACCGCCTGGACGAGGTCATCCGCTTCCGCCCC
CTCACCGAGGAGGAGCTGGTGCGGGTGGCCGAGCTCATGCTGGAGGAGATCCAGAAAGAGCTCAAGGCCCGGGACGTAGA
GGTCACCTTCGCCCCCGAGGTGGCCCGCTTCGTAGTGGACCAGGCCCCCAAGACGGGGAGCGCCCGGGCCATCCGTGGGG
TCATCCGGGAGCGCATAGAAGACCCCCTCTCCCTGGCCCTCCTGAAGAAGCCCACGGGCCGCCTTTACGTGACCGTGGAG
GACGGGGGCCTGGCCTTCCACGAGGTGGAGGAGTTCCTGGTCTAG
ATGAACAGGTACGACGATCGCGCCAGGCTGGTCTTCCACTACGCGAGGGAGGAGGGGAGCCGCTTAGGCCACTCCATGAT
CGGCCCGGAGCACCTCCTCCTGGGCCTGATGCGCGAGGGGGGCACGGCGGCCCGCATCCTCCAGGAGTACGGGGCGAGCC
TCGAGGCCATGCGCCGCATGGTGGAGGAGCTGGTGGGCCGCGGCGAGGGGAGCCGCACCGGGGAACCCCCCGCCATCACG
CCCAGGGCGAGGCGGGTCATGGAGCTGGCCAGCGCCGAGGCCCGCAACATGGGGGCCCAGGTGATCGGCACCGAGCACAT
CCTCCTGGGCATCATCCGCGAAGGGGACGGGATCGCCTACCGCATCCTCTCCCACTTCGCCAAGGACGTGGACGCCATCC
GCTGGCGCATCCTGGCCATGGCGGATAACCGCGAGCGGGAAAAGCCCGTGAACACGCCTTTCCTGGACGAGTACGGCCGC
GACCTCACCAAGGAGGCCCGGGAAGGGAAGCTGGACCCGGTGATCGGCCGCCAGGAGGAGATCAACCGGGTGATCCAGAT
CCTGGCCCGCCGCACCAAGAACAACCCGGTGCTCATCGGGGACCCCGGGGTGGGCAAGACCGCCATCGTGGAAGGGCTGG
CCCAGGCCATCGTGGAGGGCCGGGTGCCCCCCATCCTCAAGGGGGCCCGGGTGGTGGCCATTGACCTGGCCGGGGTGGTG
GCGGGCACCAAGTACCGGGGCGAGTTTGAGGAGCGCCTGCGCCAGATCATTGAGGAGCTCAAAAACGCCAAGGTCATCGC
CTTCATTGACGAGCTCCACACCCTGATCGGCGCCGGGGGGGCCGAGGGCACCCTGGACGCCGCCAACATCCTCAAGCCCG
CCCTGGCCCGGGGCGAGATCCAGGTCATCGGGGCCACCACCACCGGGGAGTACCACCGCTACATAGAGAAAGACGCCGCC
CTGGAGCGGCGCTTCCAGCCCGTCATCGTCCTGGAGCCCTCCCCAGAGGAGACCCTGGAGATCCTAAAAGGCCTCCGGCC
CCGCTACGAGGCCCACCACGGGGTCATCATCCCCGACGAGATCCTGGAGCTTTCCGTCAAGATCGGCATCCGTTCCCTCC
CGGGGCGCAACTTCCCCGACAAGGCCATTGACCTCATTGACGAGGCCGCCAGCCGGGTCCGCCTCAACGCCTCCCTAGGC
CTCCCCGTAGCCGAGGAAGAGGACGGCACCCCGGTGGTCACCCGGGAGGACATTGAGGCCGTGGTGGACTCCTGGGGCGG
GGTCTACGTGGACGACAAGGACGACGAGAAGCTCATGCACCTGGAGGAGGAGCTCAGAAAGCGGGTGGTGGGCCAGGAGG
AGGCCATCAAGGCCCTGGCCAACGCCCTCCGCCGGGCCCGGGTGGGCCTTGGGGGGAGGACCAGGGTGGCGGCCAGCTTC
CTCTTCGTGGGCCAAAGCGGCGTGGGCAAGACCCAGCTGGCCAAGGCCCTGGCCGAGGTCCTCTTCGGCTCGGAGCGGGC
CCTCATCCGCTTTGACATGTCCGAGTTCCAGGAGCCCCACTCCATCTCCAAGCTGATCGGGGCCCCTCCCGGCTACGTGG
GCTACGAGCAGGGGGGCCGCCTCACCGAGGCCGTCCGCCGCCAGCCCTTCAGCGTGGTCCTCCTGGACGAGATTGAGAAG
GCCCACCCCGACATCTACAACACCTTCCTCCAGGTCCTGGACGAGGGCCGCCTCACCGACGGCATGGGGCGGACCGTGGA
CTTCCGCCGGGTCATCCTCATCATGACCTCCAACACCGGCTACAACGTGGGCCCGGCCATCGGCTTCACCTCCAAGGAGG
TGGACACCGAGTCCCCCTTGAAGGCCCTCTTCACCCCCGAGTTCCTGGACCGCCTGGACGAGGTCATCCGCTTCCGCCCC
CTCACCGAGGAGGAGCTGGTGCGGGTGGCCGAGCTCATGCTGGAGGAGATCCAGAAAGAGCTCAAGGCCCGGGACGTAGA
GGTCACCTTCGCCCCCGAGGTGGCCCGCTTCGTAGTGGACCAGGCCCCCAAGACGGGGAGCGCCCGGGCCATCCGTGGGG
TCATCCGGGAGCGCATAGAAGACCCCCTCTCCCTGGCCCTCCTGAAGAAGCCCACGGGCCGCCTTTACGTGACCGTGGAG
GACGGGGGCCTGGCCTTCCACGAGGTGGAGGAGTTCCTGGTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
48.181 |
100 |
0.523 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
42.125 |
100 |
0.448 |
| clpC | Streptococcus pneumoniae TIGR4 |
41.304 |
100 |
0.44 |
| clpC | Streptococcus pneumoniae D39 |
41.864 |
100 |
0.435 |
| clpC | Streptococcus pneumoniae Rx1 |
41.864 |
100 |
0.435 |
| clpC | Streptococcus thermophilus LMD-9 |
39.95 |
100 |
0.433 |
| clpC | Streptococcus thermophilus LMG 18311 |
39.698 |
100 |
0.431 |
| clpC | Streptococcus mutans UA159 |
38.945 |
100 |
0.422 |
| clpE | Streptococcus mutans UA159 |
48.773 |
83.243 |
0.406 |
| clpE | Streptococcus pneumoniae TIGR4 |
47.386 |
83.379 |
0.395 |
| clpE | Streptococcus pneumoniae Rx1 |
47.386 |
83.379 |
0.395 |
| clpE | Streptococcus pneumoniae D39 |
47.386 |
83.379 |
0.395 |
| clpE | Streptococcus pneumoniae R6 |
47.386 |
83.379 |
0.395 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
47.463 |
83.243 |
0.395 |
| clpA | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
38.808 |
93.733 |
0.364 |